RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TBXAS1P24557 533 aaPredicted RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 PPP1R2P41236 205 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 DAOAP59103 153 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 UBE2HP62256 183 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 RACK1P63244 317 aaKnown RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 CAMK2BQ13554 666 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 ARID5BQ14865 1188 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 CAMK4Q16566 473 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 NUGGCQ68CJ6 796 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 KIAA0895LQ68EN5 471 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 LCLAT1Q6UWP7 414 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 ADAT2Q7Z6V5 191 aaKnown RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 PDCD7Q8N8D1 485 aaKnown RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 KDM1BQ8NB78 822 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 FIBINQ8TAL6 211 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 UBA3Q8TBC4 463 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 HNRNPLLQ8WVV9 542 aaKnown RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 KAT5Q92993 513 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 TTC17Q96AE7 1141 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 LMLNQ96KR4 655 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 DDX50Q9BQ39 737 aaKnown RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 KIAA1468Q9P260 1216 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 LOC400499M0QZD8 3231 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 A0A1B0GTQ1 180 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 A0A1W2PPC4 97 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 GOLGA8CPA6NN73 597 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 RNF225M0QZC1 329 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-212ENST00000597995 KCNK3O14649 394 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 MSI1O43347 362 aaKnown RBP12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ACSL4O60488 711 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ASLP04424 464 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 CD70P32970 193 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 SGSHP51688 502 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 C21orf59P57076 290 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ST8SIA6P61647 398 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 CYP4F3Q08477 520 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 CCDC40Q4G0X9 1142 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 FAM133BQ5BKY9 247 aaKnown RBP12.99□□□□□ -0.33
TRIM28-212ENST00000597995 KCNT1Q5JUK3 1230 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 RFWD3Q6PCD5 774 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 TMPRSS12Q86WS5 348 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 TRIM59Q8IWR1 403 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 SCUBE3Q8IX30 993 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 WFDC5Q8TCV5 224 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 SLC35F5Q8WV83 523 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 SKA1Q96BD8 255 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 MYO19Q96H55 970 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ZSWIM1Q9BR11 485 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ACE2Q9BYF1 805 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-212ENST00000597995 PABPC3Q9H361 631 aaKnown RBP12.99□□□□□ -0.33
TRIM28-212ENST00000597995 PCDHGA1Q9Y5H4 931 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 TMEM131Q92545 1883 aa12.99□□□□□ -0.33
TRIM28-212ENST00000597995 ASXL3Q9C0F0 2248 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 CELSR3Q9NYQ7 3312 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 A0A087WV48 116 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 GOLGA6L7A0A1B0GV03 622 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 BICDL2A1A5D9 508 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 TARSL2A2RTX5 802 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 RNASEH1O60930 286 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 CALCAP01258 141 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 IGHV4-34P06331 123 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 PAEPP09466 180 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 CDK4P11802 303 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 LCP1P13796 627 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 SLC6A4P31645 630 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 GALCP54803 685 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 MARSP56192 900 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 TBX4P57082 545 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 PAK1Q13153 545 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 CNGA2Q16280 664 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 HNRNPA1L2Q32P51 320 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 PMF1Q6P1K2 205 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 ARHGEF19Q8IW93 802 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 MFN1Q8IWA4 741 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 HJURPQ8NCD3 748 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 GANCQ8TET4 914 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 TFAP2BQ92481 460 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 HSFY1Q96LI6 401 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 SRRTQ9BXP5 876 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 FBXL12Q9NXK8 326 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 FTSJ1Q9UET6 329 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 FZD4Q9ULV1 537 aa12.98□□□□□ -0.33
TRIM28-212ENST00000597995 TPX2Q9ULW0 747 aaKnown RBP12.98□□□□□ -0.33
TRIM28-212ENST00000597995 IGSF10Q6WRI0 2623 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 TYW5A2RUC4 315 aaKnown RBP12.97□□□□□ -0.33
TRIM28-212ENST00000597995 C10orf142B7Z368 130 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 SIN3BO75182 1162 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 GABBR2O75899 941 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 LTFP02788 710 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 SRPRAP08240 638 aaKnown RBP12.97□□□□□ -0.33
TRIM28-212ENST00000597995 CSKP41240 450 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 KCNH2Q12809 1159 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 NNTQ13423 1086 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 STILQ15468 1287 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 CST6Q15828 149 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 NADSYN1Q6IA69 706 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 LAYNQ6UX15 382 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 MARCH9Q86YJ5 346 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 IRF2BP1Q8IU81 584 aa12.97□□□□□ -0.33
TRIM28-212ENST00000597995 CCDC117Q8IWD4 279 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms