RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	DCAF6	Q58WW2	860 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	SYPL2	Q5VXT5	272 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	GLRX5	Q86SX6	157 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	MARCH9	Q86YJ5	346 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	TRIM59	Q8IWR1	403 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	DHX40	Q8IX18	779 aa	Known RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	EHBP1	Q8NDI1	1231 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	FIBIN	Q8TAL6	211 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	BAHD1	Q8TBE0	780 aa	Predicted RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	GANC	Q8TET4	914 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	AZIN2	Q96A70	460 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	TTC17	Q96AE7	1141 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	MRGPRX3	Q96LB0	322 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	SERPINB11	Q96P15	392 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	ORAI3	Q9BRQ5	295 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	INTS2	Q9H0H0	1204 aa	Known RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	RSPH9	Q9H1X1	276 aa	Predicted RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	PABPC3	Q9H361	631 aa	Known RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	FBRS	Q9HAH7	460 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	TOR4A	Q9NXH8	423 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	SERGEF	Q9UGK8	458 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	SUN2	Q9UH99	717 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	APOBEC2	Q9Y235	224 aa	Known RBP	10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	TLR6	Q9Y2C9	796 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	ANKRD6	Q9Y2G4	727 aa		10.92	□□□□□ -0.66
LSM4-205	ENST00000597776	CELSR3	Q9NYQ7	3312 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	TTC34	A8MYJ7	566 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	MID1	O15344	667 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	P4HA2	O15460	535 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	FLRT2	O43155	660 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	IGHV4-34	P06331	123 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	ATXN1L	P0C7T5	689 aa	Known RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	CD27	P26842	260 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	GPD2	P43304	727 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	GRIA4	P48058	902 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	RPL34	P49207	117 aa	Known RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	ST8SIA6	P61647	398 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	PITX1	P78337	314 aa	Predicted RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	IL9R	Q01113	521 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	TEAD4	Q15561	434 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	MS4A13	Q5J8X5	152 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	PITRM1	Q5JRX3	1037 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	RAP1GAP2	Q684P5	730 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	CCNI2	Q6ZMN8	369 aa	Predicted RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	PROSER1	Q86XN7	944 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	LGI2	Q8N0V4	545 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	RHBDD1	Q8TEB9	315 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	SLC39A13	Q96H72	371 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	DDX50	Q9BQ39	737 aa	Known RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	IRX2	Q9BZI1	471 aa	Predicted RBP	10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	SGK2	Q9HBY8	427 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	ACP6	Q9NPH0	428 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	FBXL12	Q9NXK8	326 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	CYTH4	Q9UIA0	394 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	LHX6	Q9UPM6	363 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	PCDHGB2	Q9Y5G2	931 aa		10.91	□□□□□ -0.66
LSM4-205	ENST00000597776	TMEM131	Q92545	1883 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776		A0A1W2PP55	124 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	TYW5	A2RUC4	315 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776		E5RJQ4	531 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776		H0Y8X5	98 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CAPN9	O14815	690 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	PAPSS1	O43252	624 aa	Predicted RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	LETM1	O95202	739 aa	Predicted RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	LUC7L3	O95232	432 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	AFP	P02771	609 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ASL	P04424	464 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	PPP1R2	P41236	205 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	GALC	P54803	685 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	NUCB2	P80303	420 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	NNT	Q13423	1086 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	MORC3	Q14149	939 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CST6	Q15828	149 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CCDC157	Q569K6	752 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ZC3H12A	Q5D1E8	599 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	C9orf64	Q5T6V5	341 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	KIAA0895L	Q68EN5	471 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	GJB7	Q6PEY0	223 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	NCEH1	Q6PIU2	408 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	DBX2	Q6ZNG2	339 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ADAT2	Q7Z6V5	191 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CHSY1	Q86X52	802 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CIR1	Q86X95	450 aa	Predicted RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	MMAA	Q8IVH4	418 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	APCDD1	Q8J025	514 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ZNF557	Q8N988	423 aa	Predicted RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	MDM1	Q8TC05	714 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	SLC6A18	Q96N87	628 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CDC6	Q99741	560 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	SRRT	Q9BXP5	876 aa	Known RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	SLC4A5	Q9BY07	1137 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	NEUROG2	Q9H2A3	272 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	UBE2T	Q9NPD8	197 aa	Predicted RBP	10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	OSGEP	Q9NPF4	335 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	TJP2	Q9UDY2	1190 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	SLCO3A1	Q9UIG8	710 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	CNTN6	Q9UQ52	1028 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	ERVW-1	Q9UQF0	538 aa		10.9	□□□□□ -0.66
LSM4-205	ENST00000597776	NCKAP1	Q9Y2A7	1128 aa		10.9	□□□□□ -0.66

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