RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MAGEF1Q9HAY2 307 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 SLC39A2Q9NP94 309 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 DMAC2Q9NW81 257 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 PCDHB1Q9Y5F3 818 aa10.54□□□□□ -0.72
TRIM28-210ENST00000597618 PVALEFA0A1B0GWK0 134 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 PYCARD-AS1I3L0S3 204 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 IRAK2O43187 625 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 KLK10O43240 276 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 LATO43561 262 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 ZBED1O96006 694 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 MPOP05164 745 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 GOT1P17174 413 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 SLC8A1P32418 973 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 NUDT1P36639 197 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 TKTL1P51854 596 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 ADPRHP54922 357 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 GABREP78334 506 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 DAB2P98082 770 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 VAC14Q08AM6 782 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 OVGP1Q12889 678 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 ZNF211Q13398 564 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-210ENST00000597618 HS1BP3Q53T59 392 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 PM20D1Q6GTS8 502 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 MFN1Q8IWA4 741 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 TTC39CQ8N584 583 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 MFSD2AQ8NA29 543 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 CCDC150Q8NCX0 1101 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 OR14C36Q8NHC7 312 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 WFDC5Q8TCV5 224 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 RNF139Q8WU17 664 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 MYO19Q96H55 970 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 HEXIM2Q96MH2 286 aaKnown RBP10.53□□□□□ -0.72
TRIM28-210ENST00000597618 DEPDC7Q96QD5 511 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 USP28Q96RU2 1077 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 DPH1Q9BZG8 443 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 APOBEC3GQ9HC16 384 aaKnown RBP10.53□□□□□ -0.72
TRIM28-210ENST00000597618 THSD1Q9NS62 852 aa10.53□□□□□ -0.72
TRIM28-210ENST00000597618 TP53BP1Q12888 1972 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-210ENST00000597618 MYLKQ15746 1914 aa10.52□□□□□ -0.72
TRIM28-210ENST00000597618 EDDM13A0A1B0GTR0 161 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 TARSL2A2RTX5 802 aaKnown RBP10.52□□□□□ -0.73
TRIM28-210ENST00000597618 SIGLEC6O43699 453 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 TBL1XO60907 577 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 ADH1BP00325 375 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 C5AR1P21730 350 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 CSKP41240 450 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 LSSP48449 732 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 PSMD8P48556 350 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 SLC11A2P49281 568 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 NASPP49321 788 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-210ENST00000597618 CSRP3P50461 194 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 SGSHP51688 502 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 STK38Q15208 465 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 KMT5BQ4FZB7 885 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 ZNF394Q53GI3 561 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 C9orf64Q5T6V5 341 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 PIK3R6Q5UE93 754 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 CDCP2Q5VXM1 449 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 BHLHA9Q7RTU4 235 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 SPATS2Q86XZ4 545 aaKnown RBP10.52□□□□□ -0.73
TRIM28-210ENST00000597618 AADATQ8N5Z0 425 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 ULBP1Q9BZM6 244 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 POLR1BQ9H9Y6 1135 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 PPP4R2Q9NY27 417 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 SFMBT1Q9UHJ3 866 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 FRMD4BQ9Y2L6 1034 aa10.52□□□□□ -0.73
TRIM28-210ENST00000597618 ARID1BQ8NFD5 2236 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3DA0A087WVF3 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3IA0A087WXS9 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3EA0A087X179 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3KA0A087X1G2 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TYW5A2RUC4 315 aaKnown RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3FA6NER0 549 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3LB9A6J9 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TRIM38O00635 465 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 MSI1O43347 362 aaKnown RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 SDC3O75056 442 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 USP12O75317 370 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 NR3C1P04150 777 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 SRPRAP08240 638 aaKnown RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3HP0C7X1 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 PPP2CBP62714 309 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 PPP2CAP67775 309 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 C1orf220Q5T0J3 134 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 NUGGCQ68CJ6 796 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 ARHGAP17Q68EM7 881 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3GQ6DHY5 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3CQ6IPX1 549 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 RFWD3Q6PCD5 774 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 PRICKLE2Q7Z3G6 844 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 PRPF39Q86UA1 669 aaKnown RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 CCDC117Q8IWD4 279 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TBC1D3Q8IZP1 549 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 ANKRD52Q8NB46 1076 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 HJURPQ8NCD3 748 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 OR4C6Q8NH72 309 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 FIBINQ8TAL6 211 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 TAS1R2Q8TE23 839 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 EDEM1Q92611 657 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 LMLNQ96KR4 655 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms