RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NCAPGQ9BPX3 1015 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 TKTL2Q9H0I9 626 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 WDCPQ9H6R7 721 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 LMAN1LQ9HAT1 526 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 MARK1Q9P0L2 795 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 MUC6Q6W4X9 2439 aa15.5■□□□□ 0.07
TRIM28-207ENST00000597136 KIF2AO00139 706 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 FANCGO15287 622 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TULP3O75386 442 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PAGE1O75459 146 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 LATS1O95835 1130 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 F9P00740 461 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 EGFP01133 1207 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TUBB4AP04350 444 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CHRNB1P11230 501 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 AOC1P19801 751 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 MIPP30301 263 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 RDXP35241 583 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 SSR1P43307 286 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CLCN5P51795 746 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TAS2R40P59535 323 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 MS4A13Q5J8X5 152 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 SYT10Q6XYQ8 523 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 C14orf80Q86SX3 495 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CFAP52Q8N1V2 620 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 ATP6V0D2Q8N8Y2 350 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 DDI1Q8WTU0 396 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 UBE2Q2Q8WVN8 375 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TMA16Q96EY4 203 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PRMT1Q99873 361 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 SIK2Q9H0K1 926 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 ARHGEF38Q9NXL2 777 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 DLGAP2Q9P1A6 1054 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 DNAI1Q9UI46 699 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PACSIN2Q9UNF0 486 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 SPAG17Q6Q759 2223 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CEP192Q8TEP8 1941 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 VPS13AQ96RL7 3174 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 ENC1O14682 589 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PENKP01210 267 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CISD3P0C7P0 127 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TNNT1P13805 278 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TACR2P21452 398 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 IL1R2P27930 398 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 AVPR2P30518 371 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 RPS24P62847 133 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 SLC25A11Q02978 314 aaKnown RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 KDSRQ06136 332 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 ARTNQ5T4W7 220 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 LGI2Q8N0V4 545 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PHTF2Q8N3S3 785 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 HES6Q96HZ4 224 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PRICKLE1Q96MT3 831 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-207ENST00000597136 NELL2Q99435 816 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 TLR10Q9BXR5 811 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 STIM2Q9P246 746 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 PCSK1NQ9UHG2 260 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 USP18Q9UMW8 372 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 HS3ST4Q9Y661 456 aa15.49■□□□□ 0.07
TRIM28-207ENST00000597136 CKAP5Q14008 2032 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 NYNRINQ9P2P1 1898 aaKnown RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 MIF4GDA9UHW6 222 aaKnown RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 K7EQS6 105 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 PRPSAP2O60256 369 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CACNG3O60359 315 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 TBL1XO60907 577 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 SLC2A3P11169 496 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 HOXD9P28356 352 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CTNNA1P35221 906 aaKnown RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 IRAK1P51617 712 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 AMPD2Q01433 879 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CCINQ13939 588 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 GAS6Q14393 721 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 RPS6KA1Q15418 735 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 MPPE1Q53F39 396 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 BRMS1LQ5PSV4 323 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 LRRC38Q5VT99 294 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 TXNRD3NBQ6F5E7 133 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 SCYL2Q6P3W7 929 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CYP4V2Q6ZWL3 525 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 SND1Q7KZF4 910 aaKnown RBP eCLIP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 RHOT1Q8IXI2 618 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CCDC185Q8N715 623 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 WFDC5Q8TCV5 224 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 KRT35Q92764 455 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CLDN23Q96B33 292 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 MSANTD3Q96H12 275 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 PEBP4Q96S96 227 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 PNKPQ96T60 521 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 DNAJC17Q9NVM6 304 aaKnown RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 TMEM51Q9NW97 253 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 SLC12A6Q9UHW9 1150 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 FBXO10Q9UK96 956 aa15.48■□□□□ 0.07
TRIM28-207ENST00000597136 MRPS17Q9Y2R5 130 aaKnown RBP15.48■□□□□ 0.07
TRIM28-207ENST00000597136 CTAGE9A4FU28 777 aa15.47■□□□□ 0.07
TRIM28-207ENST00000597136 PSTPIP1O43586 416 aa15.47■□□□□ 0.07
TRIM28-207ENST00000597136 CYBBP04839 570 aa15.47■□□□□ 0.07
TRIM28-207ENST00000597136 ATP1A1P05023 1023 aaKnown RBP15.47■□□□□ 0.07
TRIM28-207ENST00000597136 CTNNA2P26232 953 aa15.47■□□□□ 0.07
TRIM28-207ENST00000597136 CASQ1P31415 396 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms