RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 TBX4P57082 545 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 ACAP1Q15027 740 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 SHBQ15464 509 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 C9orf64Q5T6V5 341 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 KIAA0895LQ68EN5 471 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 CLEC17AQ6ZS10 378 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 RRAGAQ7L523 313 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 CARNMT1Q8N4J0 409 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 GANCQ8TET4 914 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 TTC17Q96AE7 1141 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 LRIG1Q96JA1 1093 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 CDC6Q99741 560 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 PCED1AQ9H1Q7 454 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 RSPH9Q9H1X1 276 aaPredicted RBP12.07□□□□□ -0.48
LIG3-207ENST00000586119 PABPC3Q9H361 631 aaKnown RBP12.07□□□□□ -0.48
LIG3-207ENST00000586119 OSGEPQ9NPF4 335 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 FBXL12Q9NXK8 326 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 SUN2Q9UH99 717 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 NAALADL1Q9UQQ1 740 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 TDRD6O60522 2096 aaKnown RBP12.07□□□□□ -0.48
LIG3-207ENST00000586119 BPTFQ12830 3046 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 ITPR1Q14643 2758 aa12.07□□□□□ -0.48
LIG3-207ENST00000586119 M0QYV0 167 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 PLK4O00444 970 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 TNFSF14O43557 240 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 LATS1O95835 1130 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 LTFP02788 710 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 ATP5BP06576 529 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 SETSIPP0DME0 302 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 CD44P16070 742 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 GRIA4P48058 902 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 FMO5P49326 533 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 METAP1P53582 386 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 FKBP3Q00688 224 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 KCNJ12Q14500 433 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 SUZ12Q15022 739 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 TEAD4Q15561 434 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 CNGA2Q16280 664 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 ZNF658Q5TYW1 1059 aaPredicted RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 SYPL2Q5VXT5 272 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 ZNF776Q68DI1 518 aaPredicted RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 NCEH1Q6PIU2 408 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 MMAAQ8IVH4 418 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 ARHGEF19Q8IW93 802 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 MFN1Q8IWA4 741 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 SCUBE3Q8IX30 993 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 APCDD1Q8J025 514 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 FMR1NBQ8N0W7 255 aaPredicted RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 SCML4Q8N228 414 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 FIBINQ8TAL6 211 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 LMO3Q8TAP4 145 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 IGSF8Q969P0 613 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 RPL10LQ96L21 214 aaKnown RBP12.06□□□□□ -0.48
LIG3-207ENST00000586119 FAM129BQ96TA1 746 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 CAAP1Q9H8G2 361 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 SGK2Q9HBY8 427 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 ERVW-1Q9UQF0 538 aa12.06□□□□□ -0.48
LIG3-207ENST00000586119 LOC400499M0QZD8 3231 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 A0A1B0GTQ1 180 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 A0A1W2PPC4 97 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 SLC16A3O15427 465 aaKnown RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 MOCS2O96007 188 aaPredicted RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 VAV1P15498 845 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 SLC11A2P49281 568 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 CCT8P50990 548 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 PITX1P78337 314 aaPredicted RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 ZBTB16Q05516 673 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 BNIP3Q12983 259 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 DNAJC3Q13217 504 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 E2F5Q15329 346 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 CST6Q15828 149 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 DCAF6Q58WW2 860 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 MS4A13Q5J8X5 152 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 MPP7Q5T2T1 576 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 ADAT2Q7Z6V5 191 aaKnown RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 UNC45BQ8IWX7 931 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 STK40Q8N2I9 435 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 AADATQ8N5Z0 425 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 DQX1Q8TE96 717 aaKnown RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 SLC39A13Q96H72 371 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 GBP4Q96PP9 640 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 ACP6Q9NPH0 428 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 ARMCX3Q9UH62 379 aaPredicted RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 KIAA1257Q9ULG3 409 aa12.05□□□□□ -0.48
LIG3-207ENST00000586119 NYNRINQ9P2P1 1898 aaKnown RBP12.05□□□□□ -0.48
LIG3-207ENST00000586119 A0A1W2PR77 199 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 C10orf142B7Z368 130 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 VILLO15195 856 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 PCDHGA12O60330 932 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 RNASEH2AO75792 299 aaKnown RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 PAEPP09466 180 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 TBXAS1P24557 533 aaPredicted RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 SLC8A1P32418 973 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 GRK6P43250 576 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 STK19P49842 368 aaPredicted RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 ZNF445P59923 1031 aa12.04□□□□□ -0.48
LIG3-207ENST00000586119 YWHAEP62258 255 aaKnown RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 SMAD1Q15797 465 aaKnown RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 HNRNPA1L2Q32P51 320 aaKnown RBP12.04□□□□□ -0.48
LIG3-207ENST00000586119 PITRM1Q5JRX3 1037 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms