RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC185Q8N715 623 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 PQLC3Q8N755 202 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 SCAMP5Q8TAC9 235 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 EDEM1Q92611 657 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 FATE1Q969F0 183 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 EXOC4Q96A65 974 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ACSF2Q96CM8 615 aaPredicted RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 LRRC39Q96DD0 335 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 BTN2A3PQ96KV6 586 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 PGLYRP2Q96PD5 576 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 KCTD15Q96SI1 283 aaPredicted RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 TMEM121Q9BTD3 319 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TMEM109Q9BVC6 243 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ARHGEF4Q9NR80 690 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 EVA1BQ9NVM1 165 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS39-213ENST00000570062 MTMR10Q9NXD2 777 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 DNMT3LQ9UJW3 386 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 HEY1Q9Y5J3 304 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 IRAK3Q9Y616 596 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 MRPL42Q9Y6G3 142 aaKnown RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 UNC80Q8N2C7 3258 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TTC3P53804 2025 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 A0A1W2PQH9 124 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 WDR27A2RRH5 827 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ZSCAN5CA6NGD5 496 aaPredicted RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 ERI2A8K979 691 aaKnown RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 KCNU1A8MYU2 1149 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HMGB1P1B2RPK0 211 aaPredicted RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 PRRG1O14668 218 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 KCNN4O15554 427 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 CREB3O43889 395 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ABHD2P08910 425 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 GSTA2P09210 222 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 GOT1P17174 413 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ERCC2P18074 760 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 NDUFV2P19404 249 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 IVDP26440 423 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 EPHB2P29323 1055 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HOXC13P31276 330 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HSD17B3P37058 310 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 MAGEA6P43360 314 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 SLC11A2P49281 568 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HARS2P49590 506 aaKnown RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 NDST2P52849 883 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 MRPS25P82663 173 aaKnown RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 ADCY2Q08462 1091 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 PARP6Q2NL67 630 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ANO4Q32M45 955 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 LINC01559Q495D7 138 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 DNAJC21Q5F1R6 531 aaKnown RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 HECTD3Q5T447 861 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 NCBP2-AS2Q69YL0 99 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ITPRIPL1Q6GPH6 555 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 C1orf228Q6PIY5 440 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ZDHHC24Q6UX98 284 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 OTOP2Q7RTS6 562 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ANKS1BQ7Z6G8 1248 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 DDX42Q86XP3 938 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS39-213ENST00000570062 VPS52Q8N1B4 723 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ELMOD1Q8N336 334 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 LEMD2Q8NC56 503 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 MCUQ8NE86 351 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 UBLCP1Q8WVY7 318 aaPredicted RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 HTR3CQ8WXA8 447 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 NDRG1Q92597 394 aaKnown RBP8.21□□□□□ -1.1
VPS39-213ENST00000570062 PLD4Q96BZ4 506 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HDAC11Q96DB2 347 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 VWCEQ96DN2 955 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 TBC1D31Q96DN5 1066 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 SLC39A13Q96H72 371 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 TSGA13Q96PP4 275 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 QKIQ96PU8 341 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS39-213ENST00000570062 SH3GL2Q99962 352 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 CLSTN3Q9BQT9 956 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 HERPUD2Q9BSE4 406 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 TXLNGYQ9BZA5 131 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 NACA2Q9H009 215 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 CYP4F11Q9HBI6 524 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 USP29Q9HBJ7 922 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 TMEM30AQ9NV96 361 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 DTLQ9NZJ0 730 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 MARCH2Q9P0N8 246 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 ATP8A1Q9Y2Q0 1164 aa8.21□□□□□ -1.1
VPS39-213ENST00000570062 SYNJ2BP-COX16A0A087WUM0 186 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 FAM181BA6NEQ2 426 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 E7EVH7 732 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 DCLK1O15075 740 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 ALOX15BO15296 676 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TLR5O60602 858 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TCEA3O75764 348 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 SASH3O75995 380 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 FGF18O76093 207 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TTC4O95801 387 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 MLNP12872 115 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 RHOQP17081 205 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TFE3P19532 575 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 TPSB2P20231 275 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 AMPD1P23109 780 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 CCNCP24863 283 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms