RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 CPED1A4D0V7 1026 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 WIPF3A6NGB9 483 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 K7ESM1 405 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 CHKAP35790 457 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 PLA2G4AP47712 749 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 PDE4CQ08493 712 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 ZNF177Q13360 481 aaPredicted RBP11.73□□□□□ -0.53
CDH3-208ENST00000569036 CST6Q15828 149 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 ARSHQ5FYA8 562 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 SASS6Q6UVJ0 657 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 RSRC2Q7L4I2 434 aaKnown RBP11.73□□□□□ -0.53
CDH3-208ENST00000569036 C4orf32Q8N8J7 132 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 ZSWIM2Q8NEG5 633 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 OR6B3Q8NGW1 331 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 C9orf43Q8TAL5 461 aaPredicted RBP11.73□□□□□ -0.53
CDH3-208ENST00000569036 POMGNT1Q8WZA1 660 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 HPDLQ96IR7 371 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 OMDQ99983 421 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 SNX25Q9H3E2 840 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 ZSWIM6Q9HCJ5 1215 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 KLHL11Q9NVR0 708 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 CUEDC1Q9NWM3 386 aaPredicted RBP11.73□□□□□ -0.53
CDH3-208ENST00000569036 KCND2Q9NZV8 630 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 ARHGAP20Q9P2F6 1191 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 NUDT5Q9UKK9 219 aa11.73□□□□□ -0.53
CDH3-208ENST00000569036 MED13LQ71F56 2210 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 SDK2Q58EX2 2172 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 NEBLO76041 1014 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 LETM1O95202 739 aaPredicted RBP11.72□□□□□ -0.53
CDH3-208ENST00000569036 CLDN1O95832 211 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 CYBBP04839 570 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 GNLYP22749 145 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 HLA-FP30511 346 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 UGT1A5P35504 534 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 GNL1P36915 607 aaPredicted RBP11.72□□□□□ -0.53
CDH3-208ENST00000569036 HMGN5P82970 282 aaKnown RBP11.72□□□□□ -0.53
CDH3-208ENST00000569036 GTF2BQ00403 316 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 KCNMA1Q12791 1236 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 KLHDC10Q6PID8 442 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 CHST9Q7L1S5 443 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 FAM35AQ86V20 835 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 ADIPOR2Q86V24 386 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 FBXO39Q8N4B4 442 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 AADATQ8N5Z0 425 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 MYCT1Q8N699 235 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 B3GALNT2Q8NCR0 500 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 OR14C36Q8NHC7 312 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 TPCN2Q8NHX9 752 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 WFIKKN2Q8TEU8 576 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 DDI1Q8WTU0 396 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 POM121Q96HA1 1249 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 FIZ1Q96SL8 496 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 REEP2Q9BRK0 252 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 FAM213AQ9BRX8 229 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 SLC12A9Q9BXP2 914 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 SLC4A5Q9BY07 1137 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 DMAP1Q9NPF5 467 aaPredicted RBP11.72□□□□□ -0.53
CDH3-208ENST00000569036 SUN2Q9UH99 717 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 ODF2LQ9ULJ1 636 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 CA5BQ9Y2D0 317 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 ZNF510Q9Y2H8 683 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 ESPL1Q14674 2120 aa11.72□□□□□ -0.53
CDH3-208ENST00000569036 A0A087X0B3 334 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 SCAMP1O15126 338 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 RNASEH1O60930 286 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 SIN3BO75182 1162 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 PRKCGP05129 697 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 DLDP09622 509 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 TMEM191BP0C7N4 346 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 PDIA4P13667 645 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 HGFP14210 728 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 CORO1AP31146 461 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 MAT2AP31153 395 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 MLLT10P55197 1068 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 STAT4Q14765 748 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 DRAP1Q14919 205 aaPredicted RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 ZRSR1Q15695 479 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 TTC38Q5R3I4 469 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 PERM1Q5SV97 790 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 SND1Q7KZF4 910 aaKnown RBP eCLIP11.71□□□□□ -0.53
CDH3-208ENST00000569036 PRPF39Q86UA1 669 aaKnown RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 MOCOSQ96EN8 888 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 KLHDC7BQ96G42 594 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 DUSP23Q9BVJ7 150 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 RAB34Q9BZG1 259 aa11.71□□□□□ -0.53
CDH3-208ENST00000569036 RBAKQ9NYW8 714 aaPredicted RBP11.71□□□□□ -0.53
CDH3-208ENST00000569036 SPG11Q96JI7 2443 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 ABCA2Q9BZC7 2435 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 ATP8B3O60423 1300 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 UBE4BO95155 1302 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3DA0A087WVF3 549 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3IA0A087WXS9 549 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3EA0A087X179 549 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3KA0A087X1G2 549 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 A0A1B0GTL3 188 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 EME2A4GXA9 379 aaPredicted RBP11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3FA6NER0 549 aaPredicted RBP11.7□□□□□ -0.54
CDH3-208ENST00000569036 NEMP2A6NFY4 417 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 TBC1D3LB9A6J9 549 aa11.7□□□□□ -0.54
CDH3-208ENST00000569036 NVLO15381 856 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms