RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SCML1Q9UN30 329 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 CA5BQ9Y2D0 317 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 DOPEY2Q9Y3R5 2298 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 MYO9AB2RTY4 2548 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3DA0A087WVF3 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3IA0A087WXS9 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3EA0A087X179 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3KA0A087X1G2 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3FA6NER0 549 aaPredicted RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3LB9A6J9 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TGFB1I1O43294 461 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 KIF20AO95235 890 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 AFPP02771 609 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 ATP5BP06576 529 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3HP0C7X1 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 POLR2EP19388 210 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 DGKAP23743 735 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 RBMS1P29558 406 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 MAT2AP31153 395 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 SLC8A1P32418 973 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 ADPRHP54922 357 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 PDE4CQ08493 712 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 CLN3Q13286 438 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 BIRC3Q13489 604 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 RRAGBQ5VZM2 374 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3GQ6DHY5 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3CQ6IPX1 549 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 NAPEPLDQ6IQ20 393 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 FOXR1Q6PIV2 292 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TBC1D3Q8IZP1 549 aaPredicted RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLK3-222ENST00000568232 OR4C6Q8NH72 309 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 PLEKHO2Q8TD55 490 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 EXTL1Q92935 676 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 TMA16Q96EY4 203 aaKnown RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 CYFIP2Q96F07 1278 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 ATXN7L3BQ96GX2 97 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 PRR11Q96HE9 360 aaPredicted RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 TWNKQ96RR1 684 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 PANK2Q9BZ23 570 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 ABCG4Q9H172 646 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 CCDC39Q9UFE4 941 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 FZD4Q9ULV1 537 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 USP3Q9Y6I4 520 aa12.25□□□□□ -0.45
CLK3-222ENST00000568232 ARID1BQ8NFD5 2236 aaPredicted RBP12.25□□□□□ -0.45
CLK3-222ENST00000568232 LATO43561 262 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 RNASEH1O60930 286 aaKnown RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 VNN1O95497 513 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 FAM87AP0C7U9 286 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 GIMD1P0DJR0 217 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 CKMT1AP12532 417 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 PSMD8P48556 350 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 TLE1Q04724 770 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 SFSWAPQ12872 951 aaKnown RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 NCOA4Q13772 614 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 ISXQ2M1V0 245 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 HNRNPA1L2Q32P51 320 aaKnown RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 POM121L1PQ3SYA9 428 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 SGO2Q562F6 1265 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 C9orf64Q5T6V5 341 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 RSRC2Q7L4I2 434 aaKnown RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 APOLD1Q96LR9 279 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 CCNL2Q96S94 520 aaPredicted RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 CDK5RAP1Q96SZ6 601 aaKnown RBP12.24□□□□□ -0.45
CLK3-222ENST00000568232 ARHGAP9Q9BRR9 750 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 AGPAT3Q9NRZ7 376 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 IGSF5Q9NSI5 407 aa12.24□□□□□ -0.45
CLK3-222ENST00000568232 LY6G6EA0A0G2JKS1 128 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 TTC34A8MYJ7 566 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 H3BQV1 296 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 GOT1P17174 413 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 TGM2P21980 687 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 METAP1P53582 386 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 SRSF6Q13247 344 aaKnown RBP12.23□□□□□ -0.45
CLK3-222ENST00000568232 TRIP4Q15650 581 aaPredicted RBP12.23□□□□□ -0.45
CLK3-222ENST00000568232 C4orf17Q53FE4 359 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 HS1BP3Q53T59 392 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 SPOPLQ6IQ16 392 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 IGF2-ASQ6U949 168 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 SND1Q7KZF4 910 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLK3-222ENST00000568232 XXYLT1Q8NBI6 393 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 NDRG1Q92597 394 aaKnown RBP12.23□□□□□ -0.45
CLK3-222ENST00000568232 CCDC97Q96F63 343 aaPredicted RBP12.23□□□□□ -0.45
CLK3-222ENST00000568232 MRGPRX3Q96LB0 322 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 CLIC6Q96NY7 704 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 FAM129BQ96TA1 746 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 PNPLA8Q9NP80 782 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 STRIP2Q9ULQ0 834 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 U3KQA8 63 aa12.23□□□□□ -0.45
CLK3-222ENST00000568232 TEP1Q99973 2627 aaKnown RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 A0A087X0B3 334 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 CDRT15L2A8MXV6 281 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 CASC3O15234 703 aaKnown RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 C4BPAP04003 597 aaKnown RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 CR2P20023 1033 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 CTSOP43234 321 aaPredicted RBP12.22□□□□□ -0.45
CLK3-222ENST00000568232 ST8SIA6P61647 398 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 YWHAGP61981 247 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLK3-222ENST00000568232 ASIC1P78348 528 aa12.22□□□□□ -0.45
CLK3-222ENST00000568232 STAT4Q14765 748 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms