RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CYP1A1P04798 512 aaPredicted RBP13.9□□□□□ -0.18
CLK3-218ENST00000566926 TNNT1P13805 278 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 HNRNPLP14866 589 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-218ENST00000566926 ABCB4P21439 1286 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 HOXD9P28356 352 aaPredicted RBP13.9□□□□□ -0.18
CLK3-218ENST00000566926 CCR1P32246 355 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 MATKP42679 507 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 DMWDQ09019 674 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 TAF5Q15542 800 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 PIK3R6Q5UE93 754 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 NAA35Q5VZE5 725 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 ACAD10Q6JQN1 1059 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 PRR23BQ6ZRT6 265 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 SND1Q7KZF4 910 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-218ENST00000566926 C11orf74Q86VG3 221 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 SFTPA1Q8IWL2 248 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 RHOT2Q8IXI1 618 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 CHPFQ8IZ52 775 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 HJURPQ8NCD3 748 aaPredicted RBP13.9□□□□□ -0.18
CLK3-218ENST00000566926 KIF18AQ8NI77 898 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 OLIG1Q8TAK6 271 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 WFIKKN2Q8TEU8 576 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 GAB3Q8WWW8 586 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 PIWIL1Q96J94 861 aaKnown RBP13.9□□□□□ -0.18
CLK3-218ENST00000566926 HINFPQ9BQA5 517 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 DDIT4Q9NX09 232 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-218ENST00000566926 NCDNQ9UBB6 729 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 LCMT1Q9UIC8 334 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 GMEB2Q9UKD1 530 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 PAXBP1Q9Y5B6 917 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 ABCA7Q8IZY2 2146 aa13.9□□□□□ -0.18
CLK3-218ENST00000566926 PRRT4C9JH25 899 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 HRO43593 1189 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 TBL1XO60907 577 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 GRAP2O75791 330 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 RPP40O75818 363 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 MOCS2O96007 188 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 UNGP13051 313 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 HOXB2P14652 356 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 PXNP49023 591 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 GALCP54803 685 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 RNASE9P60153 205 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 GNG11P61952 73 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 C1QBPQ07021 282 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 EIF4EBP2Q13542 120 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 BYSLQ13895 437 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 USP39Q53GS9 565 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 FAM133BQ5BKY9 247 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 ZC3H12AQ5D1E8 599 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 FAM102AQ5T9C2 384 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 LAIR1Q6GTX8 287 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 ARCQ7LC44 396 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 RASSF3Q86WH2 238 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 XYLT1Q86Y38 959 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 PHF13Q86YI8 300 aaPredicted RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 GPR161Q8N6U8 529 aaKnown RBP13.89□□□□□ -0.19
CLK3-218ENST00000566926 CPA5Q8WXQ8 436 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 RFFLQ8WZ73 363 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 LACRTQ9GZZ8 138 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 UVRAGQ9P2Y5 699 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 GUCA1BQ9UMX6 200 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 CKAP5Q14008 2032 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 NUP205Q92621 2012 aa13.89□□□□□ -0.19
CLK3-218ENST00000566926 SYNJ2BP-COX16A0A087WUM0 186 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 GOLGA6L7A0A1B0GV03 622 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 KCNU1A8MYU2 1149 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 M0QYT0 321 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 CALB1P05937 261 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 CHRM1P11229 460 aaPredicted RBP13.88□□□□□ -0.19
CLK3-218ENST00000566926 MMP8P22894 467 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 SLC6A4P31645 630 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 HADHBP55084 474 aaKnown RBP13.88□□□□□ -0.19
CLK3-218ENST00000566926 NME3Q13232 169 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 GEN1Q17RS7 908 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 MS4A13Q5J8X5 152 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 BRMS1LQ5PSV4 323 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 ACBD5Q5T8D3 534 aaPredicted RBP13.88□□□□□ -0.19
CLK3-218ENST00000566926 EGFLAMQ63HQ2 1017 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 ANO7Q6IWH7 933 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 RFWD3Q6PCD5 774 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 CHSY1Q86X52 802 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 SYCE1Q8N0S2 351 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 AHI1Q8N157 1196 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 PCDHB18PQ96TA0 734 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 GABRG3Q99928 467 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
CLK3-218ENST00000566926 ELOVL2Q9NXB9 296 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 COX16Q9P0S2 106 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 BCCIPQ9P287 314 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLK3-218ENST00000566926 DOCK4Q8N1I0 1966 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 MYO15AQ9UKN7 3530 aa13.88□□□□□ -0.19
CLK3-218ENST00000566926 RCCD1A6NED2 376 aa13.87□□□□□ -0.19
CLK3-218ENST00000566926 F5H5T6 163 aa13.87□□□□□ -0.19
CLK3-218ENST00000566926 ADAM23O75077 832 aa13.87□□□□□ -0.19
CLK3-218ENST00000566926 MTA2O94776 668 aa13.87□□□□□ -0.19
CLK3-218ENST00000566926 ATP5BP06576 529 aaKnown RBP13.87□□□□□ -0.19
CLK3-218ENST00000566926 TACR2P21452 398 aa13.87□□□□□ -0.19
CLK3-218ENST00000566926 SULT1E1P49888 294 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms