RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PABPC3Q9H361 631 aaKnown RBP17.5■□□□□ 0.39
CLN3-211ENST00000564091 FBXL12Q9NXK8 326 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 SERGEFQ9UGK8 458 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 NAALADL1Q9UQQ1 740 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 GPSM3Q9Y4H4 160 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 FASNP49327 2511 aaKnown RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 GOLGA6L4A6NEF3 574 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 PSMA7O14818 248 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 MOCS2O96007 188 aaPredicted RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 IGHV4-34P06331 123 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 CD44P16070 742 aaKnown RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 CTSOP43234 321 aaPredicted RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 ST8SIA6P61647 398 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 IL9RQ01113 521 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 CCDC157Q569K6 752 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 PRAMEF14Q5SWL7 426 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 KIAA0895LQ68EN5 471 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 ADAT2Q7Z6V5 191 aaKnown RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 ARHGEF19Q8IW93 802 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 DHX40Q8IX18 779 aaKnown RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 HJURPQ8NCD3 748 aaPredicted RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 IRX2Q9BZI1 471 aaPredicted RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 XPO7Q9UIA9 1087 aaKnown RBP17.49■□□□□ 0.39
CLN3-211ENST00000564091 NCKAP1Q9Y2A7 1128 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 APC2O95996 2303 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 BAHCC1Q9P281 2608 aa17.49■□□□□ 0.39
CLN3-211ENST00000564091 PMM2O15305 246 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 MID1O15344 667 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 DKK1O94907 266 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 FBXO21O94952 628 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 CTSKP43235 329 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 CDH18Q13634 790 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 STILQ15468 1287 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 HNRNPA1L2Q32P51 320 aaKnown RBP17.48■□□□□ 0.39
CLN3-211ENST00000564091 DCAF6Q58WW2 860 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 MS4A13Q5J8X5 152 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 C9orf64Q5T6V5 341 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 KLHL10Q6JEL2 608 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 ZNF557Q8N988 423 aaPredicted RBP17.48■□□□□ 0.39
CLN3-211ENST00000564091 IGSF8Q969P0 613 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 FAM149B1Q96BN6 582 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 SLC39A13Q96H72 371 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 DHTKD1Q96HY7 919 aaPredicted RBP17.48■□□□□ 0.39
CLN3-211ENST00000564091 CEP63Q96MT8 703 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 SLC6A18Q96N87 628 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 DDX50Q9BQ39 737 aaKnown RBP17.48■□□□□ 0.39
CLN3-211ENST00000564091 NEUROG2Q9H2A3 272 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 EBF2Q9HAK2 575 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 ST7Q9NRC1 585 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 RAXQ9Y2V3 346 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 NUMA1Q14980 2115 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 ITPR1Q14643 2758 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 NBEAQ8NFP9 2946 aa17.48■□□□□ 0.39
CLN3-211ENST00000564091 LOC400499M0QZD8 3231 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 A0A1W2PP55 124 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 TYW5A2RUC4 315 aaKnown RBP17.47■□□□□ 0.39
CLN3-211ENST00000564091 FAM149AA5PLN7 773 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 TTC34A8MYJ7 566 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 RNASEH1O60930 286 aaKnown RBP17.47■□□□□ 0.39
CLN3-211ENST00000564091 ASLP04424 464 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 GRK6P43250 576 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 GPD2P43304 727 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 NUMBP49757 651 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 CCT8P50990 548 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 GALCP54803 685 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 CETN1Q12798 172 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 STIM1Q13586 685 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 PITRM1Q5JRX3 1037 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 SYPL2Q5VXT5 272 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 DENND1BQ6P3S1 775 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 NCEH1Q6PIU2 408 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 USP30Q70CQ3 517 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 TAC4Q86UU9 113 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 MMAAQ8IVH4 418 aaKnown RBP17.47■□□□□ 0.39
CLN3-211ENST00000564091 EHBP1Q8NDI1 1231 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 KREMEN1Q96MU8 473 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 SERPINB11Q96P15 392 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 SLCO3A1Q9UIG8 710 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 MAN1B1Q9UKM7 699 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 ERVW-1Q9UQF0 538 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 TLR6Q9Y2C9 796 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 CABIN1Q9Y6J0 2220 aa17.47■□□□□ 0.39
CLN3-211ENST00000564091 A0A1W2PPC4 97 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 TNFSF14O43557 240 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 PCDHGA12O60330 932 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 RNASEH2AO75792 299 aaKnown RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 LUC7L3O95232 432 aaKnown RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 RPL34P49207 117 aaKnown RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 C21orf59P57076 290 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 RACK1P63244 317 aaKnown RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 CST6Q15828 149 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 COL28A1Q2UY09 1125 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 ZC3H12AQ5D1E8 599 aaKnown RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 RAP1GAP2Q684P5 730 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 TTI2Q6NXR4 508 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 CCDC117Q8IWD4 279 aaPredicted RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 LGI2Q8N0V4 545 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 TIGD1Q96MW7 591 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 ACE2Q9BYF1 805 aaPredicted RBP17.46■□□□□ 0.39
CLN3-211ENST00000564091 GTPBP4Q9BZE4 634 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms