RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 LETM1O95202 739 aaPredicted RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 SEMA4FO95754 770 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 CER1O95813 267 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 FTH1P19P0C7X4 201 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 CSKP41240 450 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 PAK1Q13153 545 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 DCAF6Q58WW2 860 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 GLRX5Q86SX6 157 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 SLCO6A1Q86UG4 719 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 CFAP52Q8N1V2 620 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 CARNMT1Q8N4J0 409 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 SETD7Q8WTS6 366 aaKnown RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 SNX19Q92543 992 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 BIRC7Q96CA5 298 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 MRGPRX3Q96LB0 322 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 RSPH9Q9H1X1 276 aaPredicted RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 SGK2Q9HBY8 427 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 OSGEPQ9NPF4 335 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 CYTH4Q9UIA0 394 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 XPO7Q9UIA9 1087 aaKnown RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 PLXNB3Q9ULL4 1909 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 FNDC3AQ9Y2H6 1198 aaKnown RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 WDFY3Q8IZQ1 3526 aa16.32■□□□□ 0.2
CLK3-211ENST00000563297 TYW5A2RUC4 315 aaKnown RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 PAPSS1O43252 624 aaPredicted RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 SIN3BO75182 1162 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 ASLP04424 464 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 CAPNS1P04632 268 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 AFF3P51826 1226 aaKnown RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 ST8SIA6P61647 398 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 MEA1Q16626 185 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 KIF19Q2TAC6 998 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 HNRNPA1L2Q32P51 320 aaKnown RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 ZNF776Q68DI1 518 aaPredicted RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 MMS22LQ6ZRQ5 1243 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 TMEM110Q86TL2 294 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 TAC4Q86UU9 113 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 ZCCHC14Q8WYQ9 949 aaKnown RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 TM9SF3Q9HD45 589 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 ACP6Q9NPH0 428 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 PCDHGB2Q9Y5G2 931 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 SNX11Q9Y5W9 270 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 GOLGA4Q13439 2230 aaKnown RBP16.31■□□□□ 0.2
CLK3-211ENST00000563297 TMEM131Q92545 1883 aa16.31■□□□□ 0.2
CLK3-211ENST00000563297 E5RJQ4 531 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 CAPN9O14815 690 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 MED7O43513 233 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 FSBPO95073 299 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 MOCS2O96007 188 aaPredicted RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 CD27P26842 260 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 CTSOP43234 321 aaPredicted RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 EIF4EBP2Q13542 120 aaPredicted RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 ARID5BQ14865 1188 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 TTC31Q49AM3 519 aaPredicted RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 ZC3H12AQ5D1E8 599 aaKnown RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 C9orf64Q5T6V5 341 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 USP30Q70CQ3 517 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 LGI2Q8N0V4 545 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 KDM1BQ8NB78 822 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 ORAI3Q9BRQ5 295 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 THAP9Q9H5L6 903 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 POPDC2Q9HBU9 364 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 FBXL12Q9NXK8 326 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 KIAA1522Q9P206 1035 aaPredicted RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 SCML1Q9UN30 329 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 ERVW-1Q9UQF0 538 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 APOBEC2Q9Y235 224 aaKnown RBP16.3■□□□□ 0.2
CLK3-211ENST00000563297 NCKAP1Q9Y2A7 1128 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 ANKRD6Q9Y2G4 727 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 KNTC1P50748 2209 aa16.3■□□□□ 0.2
CLK3-211ENST00000563297 PTPRBP23467 1997 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 TTC34A8MYJ7 566 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 TAF4O00268 1085 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 KCNK3O14649 394 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 THAP12O43422 761 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 LUC7L3O95232 432 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 FGFR1OPO95684 399 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 TRUB2O95900 331 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 IGLV3-25P01717 112 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 SRPRAP08240 638 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 SLC9A1P19634 815 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 GALCP54803 685 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 YWHAZP63104 245 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 PITX1P78337 314 aaPredicted RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 CDH18Q13634 790 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 TAF5Q15542 800 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 TEAD4Q15561 434 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 PITRM1Q5JRX3 1037 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 RAP1GAP2Q684P5 730 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 GJB7Q6PEY0 223 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 ENOSF1Q7L5Y1 443 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 CCDC117Q8IWD4 279 aaPredicted RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 DHX40Q8IX18 779 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 APCDD1Q8J025 514 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 WDTC1Q8N5D0 677 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 BAHD1Q8TBE0 780 aaPredicted RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 RHBDD1Q8TEB9 315 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 BTN2A3PQ96KV6 586 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 MED15Q96RN5 788 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 FAM129BQ96TA1 746 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 1183.4 ms