RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 NOS2P35228 1153 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 TPMTP51580 245 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 ATXN3P54252 364 aaPredicted RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 PITX1P78337 314 aaPredicted RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 GFPT1Q06210 699 aaPredicted RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 PTPRNQ16849 979 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 PTPN20Q4JDL3 420 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 RABGAP1LQ5R372 815 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 OLFML1Q6UWY5 402 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 SLC26A9Q7LBE3 791 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 SLC41A1Q8IVJ1 513 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 MSANTD4Q8NCY6 345 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 NUP58Q9BVL2 599 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 GPR174Q9BXC1 333 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 NAA15Q9BXJ9 866 aaKnown RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 CD93Q9NPY3 652 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 RRN3Q9NYV6 651 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 XPO7Q9UIA9 1087 aaKnown RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 MEI4A8MW99 385 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 DAB1O75553 588 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 MBD3O95983 291 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 ADRB1P08588 477 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 GNSP15586 552 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 ENGP17813 658 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 CSKP41240 450 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 NME3Q13232 169 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 EIF4EBP2Q13542 120 aaPredicted RBP17.42■□□□□ 0.38
CLK3-210ENST00000563112 KRT31Q15323 416 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 UAP1L1Q3KQV9 507 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 TTC39BQ5VTQ0 682 aaPredicted RBP17.42■□□□□ 0.38
CLK3-210ENST00000563112 CDKAL1Q5VV42 579 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 ERICH1Q86X53 443 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 CACUL1Q86Y37 369 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 ZNF366Q8N895 744 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 ZNF397Q8NF99 534 aaPredicted RBP17.42■□□□□ 0.38
CLK3-210ENST00000563112 CADM4Q8NFZ8 388 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 C18orf8Q96DM3 657 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 MYEOVQ96EZ4 313 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 LMLNQ96KR4 655 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 PPP1R9BQ96SB3 815 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 PRSS16Q9NQE7 514 aa17.42■□□□□ 0.38
CLK3-210ENST00000563112 CDX4O14627 284 aaPredicted RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 KCNK5O95279 499 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 LSM8O95777 96 aaKnown RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 IGLV3-19P01714 112 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 DNTTP04053 509 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 CDH5P33151 784 aaPredicted RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 MATKP42679 507 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 MAPK8P45983 427 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 OXCT1P55809 520 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 RNASE9P60153 205 aaKnown RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 ZBTB16Q05516 673 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 SLC12A1Q13621 1099 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 STX1AQ16623 288 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 PITRM1Q5JRX3 1037 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 TAF3Q5VWG9 929 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 RNF219Q5W0B1 726 aaPredicted RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 SND1Q7KZF4 910 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLK3-210ENST00000563112 KDM1BQ8NB78 822 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 FANCLQ9NW38 375 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 TMEM51Q9NW97 253 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLK3-210ENST00000563112 INTS6Q9UL03 887 aaKnown RBP17.41■□□□□ 0.38
CLK3-210ENST00000563112 STAP1Q9ULZ2 295 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 DAAM1Q9Y4D1 1078 aa17.41■□□□□ 0.38
CLK3-210ENST00000563112 F8VZ95 297 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 M0QYT0 321 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 RNASEH1O60930 286 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 SRPRAP08240 638 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 SYPP08247 313 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 CDK11BP21127 795 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 SCNN1AP37088 669 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 NNMTP40261 264 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 GABRB2P47870 512 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 SFSWAPQ12872 951 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 TTC31Q49AM3 519 aaPredicted RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 FSCBQ5H9T9 825 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 FAM124AQ86V42 546 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 PCMTD1Q96MG8 357 aaPredicted RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 RPRD1AQ96P16 312 aaPredicted RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 PRMT1Q99873 361 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 GTPBP2Q9BX10 602 aaKnown RBP17.4■□□□□ 0.38
CLK3-210ENST00000563112 ERVW-1Q9UQF0 538 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 PAXBP1Q9Y5B6 917 aa17.4■□□□□ 0.38
CLK3-210ENST00000563112 A0A1B0GVM2 712 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 TCAF2A6NFQ2 919 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 F9P00740 461 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 NOVA1P51513 510 aaKnown RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 POLR2FP61218 127 aaKnown RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 RPS14P62263 151 aaKnown RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 ECT2LQ008S8 904 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 MYL5Q02045 173 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 PLEKHG6Q3KR16 790 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 CCDC183Q5T5S1 534 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 FAM102AQ5T9C2 384 aaPredicted RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 ZNF776Q68DI1 518 aaPredicted RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 FBXL22Q6P050 247 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 MMS22LQ6ZRQ5 1243 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 NOP9Q86U38 636 aaKnown RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 ZNF677Q86XU0 584 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms