RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 P2RY11Q96G91 374 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TRMT2BQ96GJ1 504 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 ZNF599Q96NL3 588 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 KCNK16Q96T55 309 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 HERC2P3Q9BVR0 1158 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PRKD2Q9BZL6 878 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 IQCGQ9H095 443 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 GBA3Q9H227 469 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CXCL16Q9H2A7 254 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 C11orf49Q9H6J7 331 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 LRRC4CQ9HCJ2 640 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TMEM39AQ9NV64 488 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 MKS1Q9NXB0 559 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ZC3H7BQ9UGR2 993 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 IPO11Q9UI26 975 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 MID2Q9UJV3 735 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TBX21Q9UL17 535 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ZMYND8Q9ULU4 1186 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 NAALADL1Q9UQQ1 740 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PRG3Q9Y2Y8 225 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 TIMM13Q9Y5L4 95 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 TEX264Q9Y6I9 313 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TTC3P53804 2025 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PTPRDP23468 1912 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 MTMR11A4FU01 709 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 KCNU1A8MYU2 1149 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 MFSD11O43934 449 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 TBC1D4O60343 1298 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 LRIG2O94898 1065 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SNUPNO95149 360 aaKnown RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 AP2A1O95782 977 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ATP5BP06576 529 aaKnown RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 BRAFP15056 766 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 HOXB8P17481 243 aaPredicted RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 CA4P22748 312 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ELF1P32519 619 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 CHKAP35790 457 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ALDH1A3P47895 512 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SLC11A1P49279 550 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 HARS2P49590 506 aaKnown RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 MLLT6P55198 1093 aaPredicted RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 TBX4P57082 545 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 GBE1Q04446 702 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 TNK2Q07912 1038 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 RFTN1Q14699 578 aaPredicted RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 TAF12Q16514 161 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 BBS9Q3SYG4 887 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 MGAT5BQ3V5L5 792 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 TEX44Q53QW1 395 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SPANXN3Q5MJ09 141 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SH3PXD2AQ5TCZ1 1133 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 MANEALQ5VSG8 457 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SYPL2Q5VXT5 272 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ADGRD1Q6QNK2 874 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ZNF783Q6ZMS7 281 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 RGS9BPQ6ZS82 235 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 NLRP9Q7RTR0 991 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 BHLHA9Q7RTU4 235 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 NECAB2Q7Z6G3 386 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 CEP57Q86XR8 500 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ZNF280BQ86YH2 543 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 HOMEZQ8IX15 550 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 KLHDC8BQ8IXV7 354 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 RNF168Q8IYW5 571 aaPredicted RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 KIRREL3Q8IZU9 778 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 CRIPAKQ8N1N5 446 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 FBXO36Q8NEA4 188 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PPP1R13LQ8WUF5 828 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SLC44A1Q8WWI5 657 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 STAMBPL1Q96FJ0 436 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ZNF333Q96JL9 665 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 EBNA1BP2Q99848 306 aaKnown RBP7.72□□□□□ -1.17
VPS39-204ENST00000561818 HINFPQ9BQA5 517 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 SELENOSQ9BQE4 189 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PAAF1Q9BRP4 392 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 DHRS4Q9BTZ2 278 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 TMEM106CQ9BVX2 250 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 MAGEB5Q9BZ81 275 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ZYG11BQ9C0D3 744 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PRDM12Q9H4Q4 367 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 FAM96AQ9H5X1 160 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ENTPD7Q9NQZ7 604 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 RNF19AQ9NV58 838 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 TMEM248Q9NWD8 314 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 WBP1LQ9NX94 342 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PRKAG2Q9UGJ0 569 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 DNMT3LQ9UJW3 386 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 ZNF510Q9Y2H8 683 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PCDHB12Q9Y5F1 795 aa7.72□□□□□ -1.17
VPS39-204ENST00000561818 PLXNA3P51805 1871 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 COL4A6Q14031 1691 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 IGLV3-10A0A075B6K4 115 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 FAM170AA1A519 330 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 KIAA0355O15063 1070 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MATN3O15232 486 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 TIMP1P01033 207 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SHBGP04278 402 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 FYNP06241 537 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SNRPAP09012 282 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 ZDHHC11BP0C7U3 371 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms