RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ST7Q9NRC1 585 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.08□□□□□ -0.48
USP3-220ENST00000561381 PCDHB9Q9Y5E1 797 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 CABIN1Q9Y6J0 2220 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 TMEM8BA6NDV4 472 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 H0Y626 953 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 IRAK2O43187 625 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 GADD45BO75293 160 aaPredicted RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 TRIM16O95361 564 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 MOCS2O96007 188 aaPredicted RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 ATP5BP06576 529 aaKnown RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 FTH1P19P0C7X4 201 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 KRT5P13647 590 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 CSKP41240 450 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 MATKP42679 507 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 RPL34P49207 117 aaKnown RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 GCNT1Q02742 428 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 CETN1Q12798 172 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 HNRNPDQ14103 355 aaKnown RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 KIF19Q2TAC6 998 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 FSCBQ5H9T9 825 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 SLCO6A1Q86UG4 719 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 TAC4Q86UU9 113 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 ELOA2Q8IYF1 753 aaPredicted RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 CARNMT1Q8N4J0 409 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 HJURPQ8NCD3 748 aaPredicted RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 FIBINQ8TAL6 211 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 SETD7Q8WTS6 366 aaKnown RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 GOLGA1Q92805 767 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 FAM149B1Q96BN6 582 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 BIRC7Q96CA5 298 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 SLC39A13Q96H72 371 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 INTS2Q9H0H0 1204 aaKnown RBP12.07□□□□□ -0.48
USP3-220ENST00000561381 ACP6Q9NPH0 428 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 TM7SF3Q9NS93 570 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 CYTH4Q9UIA0 394 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 PCOLCE2Q9UKZ9 415 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 CNTN6Q9UQ52 1028 aa12.07□□□□□ -0.48
USP3-220ENST00000561381 CHD6Q8TD26 2715 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 BICDL2A1A5D9 508 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 FAM221BA6H8Z2 402 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 TAF4O00268 1085 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 KCNK3O14649 394 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SIN3BO75182 1162 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 FSBPO95073 299 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SEMA4FO95754 770 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 CER1O95813 267 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 DNTTP04053 509 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 RDXP35241 583 aaKnown RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 PPP1R2P41236 205 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 CTSOP43234 321 aaPredicted RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 NUMBP49757 651 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 PITX1P78337 314 aaPredicted RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 BECN1Q14457 450 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 DCAF6Q58WW2 860 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 MS4A13Q5J8X5 152 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 KCNT1Q5JUK3 1230 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 ZNF776Q68DI1 518 aaPredicted RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 GJB7Q6PEY0 223 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 DHX40Q8IX18 779 aaKnown RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 ADAMTS14Q8WXS8 1223 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 AZIN2Q96A70 460 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 TTC17Q96AE7 1141 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 MRGPRX3Q96LB0 322 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SERPINB11Q96P15 392 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 ORAI3Q9BRQ5 295 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SRRTQ9BXP5 876 aaKnown RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 BTBD1Q9H0C5 482 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 PCED1AQ9H1Q7 454 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 TM9SF3Q9HD45 589 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 UBE2TQ9NPD8 197 aaPredicted RBP12.06□□□□□ -0.48
USP3-220ENST00000561381 TJP2Q9UDY2 1190 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SERGEFQ9UGK8 458 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 SUN2Q9UH99 717 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 TLR6Q9Y2C9 796 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 BTBD3Q9Y2F9 522 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP3-220ENST00000561381 SNX11Q9Y5W9 270 aa12.06□□□□□ -0.48
USP3-220ENST00000561381 PLXNB3Q9ULL4 1909 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 FAM47DPA6NHR8 397 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 TTC34A8MYJ7 566 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 E5RJQ4 531 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 PAPSS1O43252 624 aaPredicted RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 LETM1O95202 739 aaPredicted RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 AFPP02771 609 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 CAPNS1P04632 268 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ZNF883P0CG24 379 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 AFF3P51826 1226 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 MARSP56192 900 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 APBA1Q02410 837 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ZBTB16Q05516 673 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 PAK1Q13153 545 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 NNTQ13423 1086 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 CDH18Q13634 790 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 TAF5Q15542 800 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ZC3H12AQ5D1E8 599 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 PITRM1Q5JRX3 1037 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 FOXR2Q6PJQ5 311 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 IL27RAQ6UWB1 636 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 GLRX5Q86SX6 157 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms