RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TACR2P21452 398 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 KRT9P35527 623 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 ST8SIA6P61647 398 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 CDK17Q00537 523 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 GRIK2Q13002 908 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 NNTQ13423 1086 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 MEA1Q16626 185 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 DPCR1Q3MIW9 517 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 PITRM1Q5JRX3 1037 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 OR6B2Q6IFH4 312 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 SLC47A2Q86VL8 602 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 CIR1Q86X95 450 aaPredicted RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 DHX40Q8IX18 779 aaKnown RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 APCDD1Q8J025 514 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 ATP6V0D2Q8N8Y2 350 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 ZNF557Q8N988 423 aaPredicted RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 GANCQ8TET4 914 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 MYO19Q96H55 970 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 BTN2A3PQ96KV6 586 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 MRGPRX3Q96LB0 322 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 FAM204AQ9H8W3 233 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 IL21RQ9HBE5 538 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 PLCB1Q9NQ66 1216 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 DNAAF2Q9NVR5 837 aaKnown RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 DDIT4Q9NX09 232 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 KIAA1522Q9P206 1035 aaPredicted RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 SLC12A6Q9UHW9 1150 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 SLCO3A1Q9UIG8 710 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 ERVW-1Q9UQF0 538 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 CEP83Q9Y592 693 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 SLCO1B1Q9Y6L6 691 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 PCNX2A6NKB5 2137 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 A0A1B0GVT2 93 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 FAM47DPA6NHR8 397 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 TTC34A8MYJ7 566 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 KCNU1A8MYU2 1149 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 UPK3BL1B0FP48 263 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 C1QTNF9BB2RNN3 333 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 UPK3BL2E5RIL1 263 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 PES1O00541 588 aaKnown RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 FSBPO95073 299 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 SEMA4FO95754 770 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 DNTTP04053 509 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 ERBB2P04626 1255 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 C1QTNF9P0C862 333 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 CLCN1P35523 988 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 CSNK1EP49674 416 aaKnown RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 RNASE9P60153 205 aaKnown RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 BNC1Q01954 994 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 NME3Q13232 169 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 MAN2A1Q16706 1144 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 VWA3BQ502W6 1294 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 EFHC1Q5JVL4 640 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 ZNF776Q68DI1 518 aaPredicted RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 C11orf57Q6ZUT1 292 aaPredicted RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 FAM183BPQ6ZVS7 135 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 C1orf131Q8NDD1 294 aaKnown RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 RPL10LQ96L21 214 aaKnown RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 SLC2A13Q96QE2 648 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 TUBGCP2Q9BSJ2 902 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 SCNM1Q9BWG6 230 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 BTBD1Q9H0C5 482 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 RSPH9Q9H1X1 276 aaPredicted RBP10.57□□□□□ -0.72
LDLR-214ENST00000560628 NDST4Q9H3R1 872 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.57□□□□□ -0.72
LDLR-214ENST00000560628 PCDHGC3Q9UN70 934 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 WASF3Q9UPY6 502 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 NFE2L3Q9Y4A8 694 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 NUMA1Q14980 2115 aa10.57□□□□□ -0.72
LDLR-214ENST00000560628 CACNA1EQ15878 2313 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 F5H5T6 163 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 KCNK3O14649 394 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 MID1O15344 667 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 HYAL3O43820 417 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 GJB3O75712 270 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 MOCS3O95396 460 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 ASLP04424 464 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 GLI1P08151 1106 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 PDGFRAP16234 1089 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 ABCB4P21439 1286 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 MZF1P28698 734 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 CCR1P32246 355 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 STK19P49842 368 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 ECT2LQ008S8 904 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 ZBTB16Q05516 673 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 KCNMA1Q12791 1236 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 EIF4EBP2Q13542 120 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 RAPGEF1Q13905 1077 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 DRAP1Q14919 205 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 HNRNPA1L2Q32P51 320 aaKnown RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 MIIPQ5JXC2 388 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 C9orf64Q5T6V5 341 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 DPY19L2P1Q6NXN4 242 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 FBXL22Q6P050 247 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 MMAAQ8IVH4 418 aaKnown RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 FAM114A1Q8IWE2 563 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 FAM71AQ8IYT1 594 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 C1orf216Q8TAB5 229 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 BIRC7Q96CA5 298 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 NOX5Q96PH1 765 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms