RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 NAA15Q9BXJ9 866 aaKnown RBP18.36■□□□□ 0.53
HDDC3-205ENST00000559898 TMPRSS4Q9NRS4 437 aa18.36■□□□□ 0.53
HDDC3-205ENST00000559898 SERGEFQ9UGK8 458 aa18.36■□□□□ 0.53
HDDC3-205ENST00000559898 SLCO3A1Q9UIG8 710 aa18.36■□□□□ 0.53
HDDC3-205ENST00000559898 FRYQ5TBA9 3013 aa18.36■□□□□ 0.53
HDDC3-205ENST00000559898 TTC34A8MYJ7 566 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 SART1O43290 800 aaKnown RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 IGLV3-19P01714 112 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 MZF1P28698 734 aaPredicted RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 STK19P49842 368 aaPredicted RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 PTK2Q05397 1052 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 RAPGEF1Q13905 1077 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 TRNP1Q6NT89 227 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 C11orf57Q6ZUT1 292 aaPredicted RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 DHX40Q8IX18 779 aaKnown RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 MINDY1Q8N5J2 469 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 RPL10LQ96L21 214 aaKnown RBP18.35■□□□□ 0.53
HDDC3-205ENST00000559898 CAMK1GQ96NX5 476 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 MIR1-1HGQ9H1L0 117 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 LHX5Q9H2C1 402 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 FAM204AQ9H8W3 233 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 IL21RQ9HBE5 538 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 DDIT4Q9NX09 232 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 PLA2G4CQ9UP65 541 aa18.35■□□□□ 0.53
HDDC3-205ENST00000559898 SPAARA0A1B0GVQ0 90 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 METTL12A8MUP2 240 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 MEI4A8MW99 385 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 ARHGAP33O14559 1287 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 EPHB6O15197 1021 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 SIN3BO75182 1162 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 VAV1P15498 845 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 GFPT1Q06210 699 aaPredicted RBP18.34■□□□□ 0.53
HDDC3-205ENST00000559898 ZNF252P-AS1Q0IIN9 211 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 PLEKHG6Q3KR16 790 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 RAB6CQ53S08 254 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 TCP11X2Q5H9J9 407 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 LAYNQ6UX15 382 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 NOP9Q86U38 636 aaKnown RBP18.34■□□□□ 0.53
HDDC3-205ENST00000559898 C1orf216Q8TAB5 229 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 DNASE2BQ8WZ79 361 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 RAB6CQ9H0N0 254 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 EIF2B4Q9UI10 523 aaKnown RBP18.34■□□□□ 0.53
HDDC3-205ENST00000559898 WASF3Q9UPY6 502 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 ERVW-1Q9UQF0 538 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 NFE2L3Q9Y4A8 694 aa18.34■□□□□ 0.53
HDDC3-205ENST00000559898 TP53BP1Q12888 1972 aaPredicted RBP18.33■□□□□ 0.53
HDDC3-205ENST00000559898 PCNX2A6NKB5 2137 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 H0Y626 953 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 PES1O00541 588 aaKnown RBP18.33■□□□□ 0.52
HDDC3-205ENST00000559898 DAB1O75553 588 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 GJB3O75712 270 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 APOEP02649 317 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 ACADMP11310 421 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CD59P13987 128 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CYP11B1P15538 503 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 PDGFRAP16234 1089 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 HOXD12P35452 270 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 METAP1P53582 386 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 RNASE9P60153 205 aaKnown RBP18.33■□□□□ 0.52
HDDC3-205ENST00000559898 SLC6A3Q01959 620 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 SEMA3BQ13214 749 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 NME3Q13232 169 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CDH18Q13634 790 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 ARTNQ5T4W7 220 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 C9orf64Q5T6V5 341 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 FBXL22Q6P050 247 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 PIP4P1Q86T03 277 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CEP76Q8TAP6 659 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 SLC20A1Q8WUM9 679 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 BTN2A3PQ96KV6 586 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 FAM81BQ96LP2 452 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 VPS16Q9H269 839 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 GANQ9H2C0 597 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 HS3ST4Q9Y661 456 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CACNA1EQ15878 2313 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 SPEGQ15772 3267 aa18.33■□□□□ 0.52
HDDC3-205ENST00000559898 CHD8Q9HCK8 2581 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 HSF2BPO75031 334 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 ADCY5O95622 1261 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 ATP5BP06576 529 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 C7P10643 843 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 CSRP1P21291 193 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 KRT9P35527 623 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 CDK17Q00537 523 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 FOXC1Q12948 553 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 GRIK2Q13002 908 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 EFHC1Q5JVL4 640 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 CXorf57Q6NSI4 855 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 FAM114A1Q8IWE2 563 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 CCAR2Q8N163 923 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 DDX50Q9BQ39 737 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 NUP58Q9BVL2 599 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 PIGVQ9NUD9 493 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 ASNSD1Q9NWL6 643 aa18.32■□□□□ 0.52
HDDC3-205ENST00000559898 TPRP12270 2363 aaKnown RBP18.32■□□□□ 0.52
HDDC3-205ENST00000559898 MAP1BP46821 2468 aaKnown RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 AKAP13Q12802 2813 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 F5H5T6 163 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 M0QYT0 321 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 PLK4O00444 970 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms