RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MS4A2Q01362 244 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 ITGA7Q13683 1181 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 TFDP2Q14188 446 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 GSTA3Q16772 222 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 HEATR6Q6AI08 1181 aaKnown RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 LAYNQ6UX15 382 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 FAM149B1Q96BN6 582 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 DPEP3Q9H4B8 488 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 NRDE2Q9H7Z3 1164 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 RPF1Q9H9Y2 349 aaKnown RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 LZTS1Q9Y250 596 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 COX4I1P13073 169 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 AOC1P19801 751 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 WASHC5Q12768 1159 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 STXBP2Q15833 593 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 HSP90AA5PQ58FG0 334 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 TMCO4Q5TGY1 634 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 USP50Q70EL3 339 aaPredicted RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 SESTD1Q86VW0 696 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 FAM110BQ8TC76 370 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 TMIGD2Q96BF3 282 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 RCN3Q96D15 328 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 HPDLQ96IR7 371 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 OMDQ99983 421 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 ZNF518BQ9C0D4 1074 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 SUDS3Q9H7L9 328 aaPredicted RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 ANLNQ9NQW6 1124 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 HACL1Q9UJ83 578 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 TDRKHQ9Y2W6 561 aaKnown RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 SNX9Q9Y5X1 595 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 CITO14578 2027 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 SF3B1O75533 1304 aaKnown RBP eCLIP12.65□□□□□ -0.389e-6■■■■■ 68.9
LDLR-205ENST00000557933 OTOFQ9HC10 1997 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 FAM159BA6NKW6 160 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 H0YCG3 227 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 GABBR2O75899 941 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 CLPTM1O96005 669 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 ETFBP38117 255 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 CHN2P52757 468 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 NOL9Q5SY16 702 aaKnown RBP12.65□□□□□ -0.38
LDLR-205ENST00000557933 DCAF15Q66K64 600 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 TTC30AQ86WT1 665 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 NCAPG2Q86XI2 1143 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 LILRA2Q8N149 483 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 PCDH20Q8N6Y1 951 aaKnown RBP12.65□□□□□ -0.38
LDLR-205ENST00000557933 COLGALT1Q8NBJ5 622 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 OR52K1Q8NGK4 314 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 FAM81AQ8TBF8 368 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 MFSD3Q96ES6 412 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 NPAS2Q99743 824 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 SSC5DA1L4H1 1573 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 H3BSA7 217 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 MED7O43513 233 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 PFDN1O60925 122 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 TFAP2AP05549 437 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 STAG3L1P0CL83 205 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 SMIM18P0DKX4 95 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 SRGAP2BP0DMP2 458 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 CCDC130P13994 396 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 CDH5P33151 784 aaPredicted RBP12.65□□□□□ -0.38
LDLR-205ENST00000557933 BACE1P56817 501 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 COG7P83436 770 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 TAZQ16635 292 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 KLHDC10Q6PID8 442 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 CYP2R1Q6VVX0 501 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 BHLHE22Q8NFJ8 381 aaPredicted RBP12.65□□□□□ -0.38
LDLR-205ENST00000557933 MCRS1Q96EZ8 462 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 FCRL3Q96P31 734 aaPredicted RBP12.65□□□□□ -0.38
LDLR-205ENST00000557933 PCDHAC1Q9H158 963 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 VCX3BQ9H321 246 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 ACAD9Q9H845 621 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 VCX3AQ9NNX9 186 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 COPG2Q9UBF2 871 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 AP4B1Q9Y6B7 739 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 LOC285556D6RIA3 1793 aa12.65□□□□□ -0.38
LDLR-205ENST00000557933 C9JVG2 144 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 DKC1O60832 514 aaKnown RBP eCLIP12.65□□□□□ -0.39
LDLR-205ENST00000557933 DNAJA2O60884 412 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 CILPO75339 1184 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 FARP2O94887 1054 aaPredicted RBP12.65□□□□□ -0.39
LDLR-205ENST00000557933 FDFT1P37268 417 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 DPP6P42658 865 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 KLF10Q13118 480 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 FLOT2Q14254 428 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 MYLK3Q32MK0 819 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 PITRM1Q5JRX3 1037 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 UGT2A3Q6UWM9 527 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 MAP7D3Q8IWC1 876 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 DCLK2Q8N568 766 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 ZNF669Q96BR6 464 aaPredicted RBP12.65□□□□□ -0.39
LDLR-205ENST00000557933 MRPL45Q9BRJ2 306 aaKnown RBP12.65□□□□□ -0.39
LDLR-205ENST00000557933 MRPL1Q9BYD6 325 aaKnown RBP12.65□□□□□ -0.39
LDLR-205ENST00000557933 DTLQ9NZJ0 730 aa12.65□□□□□ -0.39
LDLR-205ENST00000557933 USP34Q70CQ2 3546 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 NUP205Q92621 2012 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 TMX2-CTNND1H3BSU7 103 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 VILLO15195 856 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 MFSD11O43934 449 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms