RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 DMWDQ09019 674 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 MPEG1Q2M385 716 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 ODF3L2Q3SX64 289 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 GFI1BQ5VTD9 330 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 WDR93Q6P2C0 686 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 RFX8Q6ZV50 586 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 TMEM199Q8N511 208 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 ARL14EPQ8N8R7 260 aaPredicted RBP4.32□□□□□ -1.72
SCFD1-216ENST00000555550 FAM47BQ8NA70 645 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 IPO4Q8TEX9 1081 aaKnown RBP4.32□□□□□ -1.72
SCFD1-216ENST00000555550 NUDCD2Q8WVJ2 157 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 KIAA1191Q96A73 305 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 MEIS3Q99687 375 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 GATA5Q9BWX5 397 aaPredicted RBP4.32□□□□□ -1.72
SCFD1-216ENST00000555550 AAMDCQ9H7C9 122 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 FSCN3Q9NQT6 498 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 SLC39A10Q9ULF5 831 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 DTNAQ9Y4J8 743 aa4.32□□□□□ -1.72
SCFD1-216ENST00000555550 PIP5K1BO14986 540 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 GLP2RO95838 553 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 IGKV3-20P01619 116 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 HOXB2P14652 356 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 ABCB4P21439 1286 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 NFATC4Q14934 902 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 DLGAP5Q15398 846 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 RINT1Q6NUQ1 792 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 LRIG3Q6UXM1 1119 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 SRLQ86TD4 932 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 ADPRHL1Q8NDY3 354 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 WFIKKN2Q8TEU8 576 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 WDR60Q8WVS4 1066 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 ZFPM2Q8WW38 1151 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 NPIPB3Q92617 1050 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 NEUROG1Q92886 237 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 NTPCRQ9BSD7 190 aaKnown RBP4.31□□□□□ -1.72
SCFD1-216ENST00000555550 ARHGAP39Q9C0H5 1083 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 ERVK-5Q9HDB9 667 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 MSRB1Q9NZV6 116 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 UTS2RQ9UKP6 389 aa4.31□□□□□ -1.72
SCFD1-216ENST00000555550 AGO2Q9UKV8 859 aaKnown RBP4.31□□□□□ -1.72
SCFD1-216ENST00000555550 TRBV5-3A0A0A0MS03 114 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 NTSR2O95665 410 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 CER1O95813 267 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 ALDOAP04075 364 aaKnown RBP4.3□□□□□ -1.72
SCFD1-216ENST00000555550 ANXA6P08133 673 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 P2RX3P56373 397 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 SLC37A1P57057 533 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 GAD2Q05329 585 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 GRM4Q14833 912 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 STARD3Q14849 445 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PGM5Q15124 567 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 NUGGCQ68CJ6 796 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 SYTL1Q8IYJ3 562 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 FAM186BQ8IYM0 893 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 FBXL14Q8N1E6 418 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 C18orf8Q96DM3 657 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 MCRS1Q96EZ8 462 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 REXO5Q96IC2 774 aaKnown RBP4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PRPF18Q99633 342 aaKnown RBP4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PIMREGQ9BSJ6 248 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PCGF6Q9BYE7 350 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 THSD1Q9NS62 852 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PCDHA12Q9UN75 941 aa4.3□□□□□ -1.72
SCFD1-216ENST00000555550 PCDH17O14917 1159 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 TLX3O43711 291 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 PLA2G6O60733 806 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 CNTN5O94779 1100 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 SGPL1O95470 568 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 NFATC1O95644 943 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 RFPL3SP0C7P2 107 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 TGM2P21980 687 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 PGGT1BP53609 377 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 RNASELQ05823 741 aaKnown RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 AAK1Q2M2I8 961 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 SMTNL2Q2TAL5 461 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ZNF569Q5MCW4 686 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 C9orf50Q5SZB4 431 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ISM2Q6H9L7 571 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ZNF474Q6S9Z5 364 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 GSG1LQ6UXU4 331 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 SLC39A5Q6ZMH5 540 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 CYB5R4Q7L1T6 521 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 TRAPPC11Q7Z392 1133 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 CUZD1Q86UP6 607 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 DEPTORQ8TB45 409 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 CENPIQ92674 756 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 MED30Q96HR3 178 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 SLITRK1Q96PX8 696 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 PAAF1Q9BRP4 392 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 STK33Q9BYT3 514 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 CCDC134Q9H6E4 229 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ARNT2Q9HBZ2 717 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 ARFGAP3Q9NP61 516 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 FNIP2Q9P278 1114 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 RAB21Q9UL25 225 aa4.29□□□□□ -1.72
SCFD1-216ENST00000555550 MAGED2Q9UNF1 606 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-216ENST00000555550 A0A087WYN8 130 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 KIR2DS5A0A0G2JLQ3 304 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms