RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 DFNA5O60443 496 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 BRINP1O60477 761 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 KIF20AO95235 890 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 DNTTP04053 509 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 WNT1P04628 370 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 ITGAVP06756 1048 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 P4HA1P13674 534 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 ASPAP45381 313 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 SNRPFP62306 86 aaKnown RBP10.96□□□□□ -0.65
VPS29-208ENST00000550267 CXADRP78310 365 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 CCDC173Q0VFZ6 552 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 KIAA0895LQ68EN5 471 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 FOXR1Q6PIV2 292 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 CPXM2Q8N436 756 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 EID2Q8N6I1 236 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 PARD3BQ8TEW8 1205 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 TMEM176AQ96HP8 235 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 LRRC27Q9C0I9 530 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 SGK2Q9HBY8 427 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 PRSS16Q9NQE7 514 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 KBTBD4Q9NVX7 518 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 CLIC5Q9NZA1 410 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.96□□□□□ -0.65
VPS29-208ENST00000550267 CKAP5Q14008 2032 aa10.96□□□□□ -0.66
VPS29-208ENST00000550267 SHROOM3Q8TF72 1996 aa10.96□□□□□ -0.66
VPS29-208ENST00000550267 FLNBO75369 2602 aaKnown RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 SLC12A8A0AV02 714 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 FAM47DPA6NHR8 397 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 STX6O43752 255 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 C1SP09871 688 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 CDK4P11802 303 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 RHOQP17081 205 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 ABCB4P21439 1286 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 HOXD9P28356 352 aaPredicted RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 HLA-FP30511 346 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 AP3M2P53677 418 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 RACK1P63244 317 aaKnown RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 DLG4P78352 724 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 CLDN10P78369 228 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 TLE3Q04726 772 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 ZBTB16Q05516 673 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 SGSM1Q2NKQ1 1148 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 TTC31Q49AM3 519 aaPredicted RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 CHST9Q7L1S5 443 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 C12orf56Q8IXR9 622 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 FAM217AQ8IXS0 508 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 ZC3H3Q8IXZ2 948 aaKnown RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 SAP25Q8TEE9 199 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 FGF11Q92914 225 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 CDK5RAP1Q96SZ6 601 aaKnown RBP10.95□□□□□ -0.66
VPS29-208ENST00000550267 ARID3AQ99856 593 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 MTG2Q9H4K7 406 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 EBF2Q9HAK2 575 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 ABCB8Q9NUT2 735 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 MARCH2Q9P0N8 246 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 PLA2G4CQ9UP65 541 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 USP3Q9Y6I4 520 aa10.95□□□□□ -0.66
VPS29-208ENST00000550267 A0A1W2PPC4 97 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 PYCARD-AS1I3L0S3 204 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 WNT9AO14904 365 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 CASP1P29466 404 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 EHHADHQ08426 723 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 BNIP3Q12983 259 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 SLC39A14Q15043 492 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 DBN1Q16643 649 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 ZACNQ401N2 412 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 MPPE1Q53F39 396 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 TAF1BQ53T94 588 aaPredicted RBP10.94□□□□□ -0.66
VPS29-208ENST00000550267 ZNF776Q68DI1 518 aaPredicted RBP10.94□□□□□ -0.66
VPS29-208ENST00000550267 RSRC2Q7L4I2 434 aaKnown RBP10.94□□□□□ -0.66
VPS29-208ENST00000550267 ADIPOR2Q86V24 386 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 SPACA3Q8IXA5 215 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 GANCQ8TET4 914 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 WFIKKN2Q8TEU8 576 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 DHX58Q96C10 678 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 USP28Q96RU2 1077 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 NT5C1AQ9BXI3 368 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 FBRSQ9HAH7 460 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 SLC39A2Q9NP94 309 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 AASDHPPTQ9NRN7 309 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 CGNQ9P2M7 1197 aaKnown RBP10.94□□□□□ -0.66
VPS29-208ENST00000550267 TFIP11Q9UBB9 837 aaKnown RBP10.94□□□□□ -0.66
VPS29-208ENST00000550267 SERGEFQ9UGK8 458 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 STRIP2Q9ULQ0 834 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 NCKAP1Q9Y2A7 1128 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 TENM4Q6N022 2769 aa10.94□□□□□ -0.66
VPS29-208ENST00000550267 PLXNA2O75051 1894 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 A0A1W2PR77 199 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 CAPN8A6NHC0 703 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 ASS1P00966 412 aaKnown RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 HLA-DRAP01903 254 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 CD58P19256 250 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 TRIM21P19474 475 aaKnown RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 GLDCP23378 1020 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 EPHA8P29322 1005 aaPredicted RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 ACTN2P35609 894 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 PIK3CAP42336 1068 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 GALCP54803 685 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 AMPD3Q01432 767 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 INCA1Q0VD86 236 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms