RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CDK17Q00537 523 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 SLC12A1Q13621 1099 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 ARID5BQ14865 1188 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 NADSYN1Q6IA69 706 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 LRSAM1Q6UWE0 723 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 USP30Q70CQ3 517 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 CHSY1Q86X52 802 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 NAXDQ8IW45 347 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 ZNF366Q8N895 744 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 ATP6V0D2Q8N8Y2 350 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 ADAM32Q8TC27 787 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 WFDC5Q8TCV5 224 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 CRACR2AQ9BSW2 395 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 SCNM1Q9BWG6 230 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 NUCKS1Q9H1E3 243 aaKnown RBP13.59□□□□□ -0.23
RTN3-213ENST00000543552 FAM204AQ9H8W3 233 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 PRSS16Q9NQE7 514 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.59□□□□□ -0.23
RTN3-213ENST00000543552 KIAA1522Q9P206 1035 aaPredicted RBP13.59□□□□□ -0.23
RTN3-213ENST00000543552 EIF2B4Q9UI10 523 aaKnown RBP13.59□□□□□ -0.23
RTN3-213ENST00000543552 WASF3Q9UPY6 502 aa13.59□□□□□ -0.23
RTN3-213ENST00000543552 CFAP47Q6ZTR5 3102 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 WDFY3Q8IZQ1 3526 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 F5H5T6 163 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 PAPSS1O43252 624 aaPredicted RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 HSF2BPO75031 334 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 GJB3O75712 270 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 KRT37O76014 449 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 LUC7L3O95232 432 aaKnown RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 TRUB2O95900 331 aaKnown RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 SRPRAP08240 638 aaKnown RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 ABCB4P21439 1286 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 NNMTP40261 264 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 OXCT1P55809 520 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 PTK2Q05397 1052 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 CAMK4Q16566 473 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 ARHGAP44Q17R89 818 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 HNRNPA1L2Q32P51 320 aaKnown RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 DCAF6Q58WW2 860 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 EFHC1Q5JVL4 640 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 RABGAP1LQ5R372 815 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 LGI2Q8N0V4 545 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 OR2I1PQ8NGU4 316 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 GANCQ8TET4 914 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 SHC3Q92529 594 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 PPP1R9BQ96SB3 815 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 RSPH9Q9H1X1 276 aaPredicted RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 OSGEPQ9NPF4 335 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 ASNSD1Q9NWL6 643 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 DACH1Q9UI36 760 aa13.58□□□□□ -0.24
RTN3-213ENST00000543552 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.58□□□□□ -0.24
RTN3-213ENST00000543552 PCNX2A6NKB5 2137 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 EDDM13A0A1B0GTR0 161 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 TARSL2A2RTX5 802 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 KCNU1A8MYU2 1149 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 SH3BP5O60239 455 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 IGLV3-25P01717 112 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 TACR2P21452 398 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 CCR1P32246 355 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 ACSL1P33121 698 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 ECT2LQ008S8 904 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 SULT2A1Q06520 285 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 TRIP6Q15654 476 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 ZC3H12AQ5D1E8 599 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 PITRM1Q5JRX3 1037 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 SYPL2Q5VXT5 272 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 CFAP52Q8N1V2 620 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 RNF34Q969K3 372 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 PPP1R13BQ96KQ4 1090 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 LMLNQ96KR4 655 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 PABPC3Q9H361 631 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 C6orf106Q9H6K1 298 aaPredicted RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 GAREM1Q9H706 876 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 SYNCQ9H7C4 482 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 DDIT4Q9NX09 232 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 TPX2Q9ULW0 747 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 PCDHGC3Q9UN70 934 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 APOBEC2Q9Y235 224 aaKnown RBP13.57□□□□□ -0.24
RTN3-213ENST00000543552 PCDHGB2Q9Y5G2 931 aa13.57□□□□□ -0.24
RTN3-213ENST00000543552 IGF2RP11717 2491 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 A0A1B0GVM2 712 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 TCAF2A6NFQ2 919 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 LRRC72A6NJI9 287 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 C1QTNF9BB2RNN3 333 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 HYAL3O43820 417 aaPredicted RBP13.56□□□□□ -0.24
RTN3-213ENST00000543552 FSBPO95073 299 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 C1QTNF9P0C862 333 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 SLC9A1P19634 815 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 SPINK2P20155 84 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 CD27P26842 260 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 PON1P27169 355 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 KRT9P35527 623 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 GRIA4P48058 902 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 BPIFB4P59827 614 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 SUZ12Q15022 739 aaKnown RBP13.56□□□□□ -0.24
RTN3-213ENST00000543552 CST6Q15828 149 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 MAN2A1Q16706 1144 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 INAVAQ3KP66 663 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 RAP1GAP2Q684P5 730 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms