RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PPARDQ03181 441 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ILF2Q12905 390 aaKnown RBP10.13□□□□□ -0.79
SS18-205ENST00000542420 EIF4EBP2Q13542 120 aaPredicted RBP10.13□□□□□ -0.79
SS18-205ENST00000542420 TBCCQ15814 346 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 GRTP1Q5TC63 336 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 NLRP9Q7RTR0 991 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 BHLHA9Q7RTU4 235 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CTAGE3PQ8IX95 158 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 MAB21L3Q8N8X9 362 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 PCSK9Q8NBP7 692 aaKnown RBP10.13□□□□□ -0.79
SS18-205ENST00000542420 DEPDC1BQ8WUY9 529 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ATP2A3Q93084 1043 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 FATE1Q969F0 183 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 LENG1Q96BZ8 264 aaPredicted RBP10.13□□□□□ -0.79
SS18-205ENST00000542420 HAPLN3Q96S86 360 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 MYLK2Q9H1R3 596 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 PRDM12Q9H4Q4 367 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 LRRC40Q9H9A6 602 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CASS4Q9NQ75 786 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SLC17A7Q9P2U7 560 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 DCDC2Q9UHG0 476 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SORCS3Q9UPU3 1222 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 FGF10O15520 208 aaPredicted RBP10.13□□□□□ -0.79
SS18-205ENST00000542420 AVILO75366 819 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 BEST1O76090 585 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 USP1O94782 785 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ERCC2P18074 760 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CLCNKBP51801 687 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 NRLP54845 237 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 C4orf50Q6ZRC1 276 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 LINC00523Q86TU6 105 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SAPCD2Q86UD0 394 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ZNF567Q8N184 647 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ANKLE1Q8NAG6 615 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SLC7A14Q8TBB6 771 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 STON2Q8WXE9 905 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SUSD3Q96L08 255 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ZFP42Q96MM3 310 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CPNE1Q99829 537 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 COLEC11Q9BWP8 271 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 GBA3Q9H227 469 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SLCO1B3Q9NPD5 702 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 SMYD2Q9NRG4 433 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ARHGEF38Q9NXL2 777 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CLDN5O00501 218 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 NRP1O14786 923 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CSH1P0DML2 217 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CSH2P0DML3 217 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CCND1P24385 295 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 PTPN3P26045 913 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MAGEA12P43365 314 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 POLD2P49005 469 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CSE1LP55060 971 aaKnown RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 AP1B1Q10567 949 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MTA1Q13330 715 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 FAXCQ5TGI0 409 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 SYPL2Q5VXT5 272 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 KCTD11Q693B1 232 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 DENND5BQ6ZUT9 1274 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 PYROXD2Q8N2H3 581 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.12□□□□□ -0.79
SS18-205ENST00000542420 ARNTL2Q8WYA1 636 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 DPF3Q92784 378 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MYLPFQ96A32 169 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 ERP27Q96DN0 273 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 FAM111AQ96PZ2 611 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 BFARQ9NZS9 450 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 PCDHB8Q9UN66 801 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MAD1L1Q9Y6D9 718 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 SHROOM3Q8TF72 1996 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 FAM237BA0A1B0GVD1 139 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MYBPHLA2RUH7 354 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MYADML2A6NDP7 307 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 YJEFN3A6XGL0 299 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CXorf49A8MYA2 514 aaPredicted RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 E7ENQ6 273 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 SNNO75324 88 aaPredicted RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 EOMESO95936 686 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 COL6A1P12109 1028 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 ACAT1P24752 427 aaKnown RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 PTPN4P29074 926 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 GP5P40197 560 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CDK7P50613 346 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 ARFIP2P53365 341 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 TSPY1Q01534 308 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 PRPSAP1Q14558 356 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 PPP2R5DQ14738 602 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 TIGD5Q53EQ6 642 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 CCSAPQ6IQ19 270 aaPredicted RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 PACS1Q6VY07 963 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 TMEM135Q86UB9 458 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 REM2Q8IYK8 340 aaPredicted RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 PTCD2Q8WV60 388 aaKnown RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 RSPH1Q8WYR4 309 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 E2F7Q96AV8 911 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 SKA1Q96BD8 255 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 MRRFQ96E11 262 aaKnown RBP10.12□□□□□ -0.79
SS18-205ENST00000542420 LGMNQ99538 433 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 RTP3Q9BQQ7 232 aa10.12□□□□□ -0.79
SS18-205ENST00000542420 SEZ6LQ9BYH1 1024 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms