RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 TLR6Q9Y2C9 796 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 BTBD3Q9Y2F9 522 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 TARSL2A2RTX5 802 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 TRIM49BA6NDI0 452 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 E9PAM4 449 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 H0Y8X5 98 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 PSMA7O14818 248 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 SRPRAP08240 638 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 CSKP41240 450 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 RPL34P49207 117 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 GCNT1Q02742 428 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 STIM1Q13586 685 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 CDH18Q13634 790 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 MS4A13Q5J8X5 152 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 NADSYN1Q6IA69 706 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 FOXR2Q6PJQ5 311 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 PPM1KQ8N3J5 372 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 MDM1Q8TC05 714 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 DQX1Q8TE96 717 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 SMARCE1Q969G3 411 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 SKA1Q96BD8 255 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 SLC39A13Q96H72 371 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 DHTKD1Q96HY7 919 aaPredicted RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 MRGPRX3Q96LB0 322 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 ZSWIM1Q9BR11 485 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 TRIM62Q9BVG3 475 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 ACE2Q9BYF1 805 aaPredicted RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 GDPD2Q9HCC8 539 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 SCUBE2Q9NQ36 999 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 FBXL12Q9NXK8 326 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 STIM2Q9P246 746 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 ADAMTS1Q9UHI8 967 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 HOOK1Q9UJC3 728 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 INTS6Q9UL03 887 aaKnown RBP12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 FZD4Q9ULV1 537 aa12.45□□□□□ -0.42
CBX3P4-202ENST00000540428 FREM2Q5SZK8 3169 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 ITIH6Q6UXX5 1313 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 A0A1B0GTQ1 180 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 LRRC72A6NJI9 287 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 C10orf142B7Z368 130 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 RNF225M0QZC1 329 aaPredicted RBP12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 PIK3R2O00459 728 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 SIN3BO75182 1162 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 MOCS3O95396 460 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 FYNP06241 537 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 BRD2P25440 801 aaKnown RBP12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 ACADSBP45954 432 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 GALCP54803 685 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 C21orf59P57076 290 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 RPS24P62847 133 aaKnown RBP12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 SMAD1Q15797 465 aaKnown RBP12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 CST6Q15828 149 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 MEA1Q16626 185 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 C9orf64Q5T6V5 341 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 CARNMT1Q8N4J0 409 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 OR2T34Q8NGX1 318 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 LMO3Q8TAP4 145 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 GANCQ8TET4 914 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 CLEC4CQ8WTT0 213 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 STK32AQ8WU08 396 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 KAT5Q92993 513 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 TIGD1Q96MW7 591 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 NUCKS1Q9H1E3 243 aaKnown RBP12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 MTG2Q9H4K7 406 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 PCDHGA1Q9Y5H4 931 aa12.44□□□□□ -0.42
CBX3P4-202ENST00000540428 EDDM13A0A1B0GTR0 161 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 A0A1W2PP55 124 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 GOLGA6L4A6NEF3 574 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 KCNK3O14649 394 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 MID1O15344 667 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 YKT6O15498 198 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 LUC7L3O95232 432 aaKnown RBP12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 CDK4P11802 303 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 GPD2P43304 727 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 CAMK2BQ13554 666 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 COL28A1Q2UY09 1125 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 CCDC40Q4G0X9 1142 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 PITRM1Q5JRX3 1037 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 KCNT1Q5JUK3 1230 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 NCEH1Q6PIU2 408 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 C19orf48Q6RUI8 117 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 LAYNQ6UX15 382 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 PDZD3Q86UT5 571 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 DHX40Q8IX18 779 aaKnown RBP12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 ELOA2Q8IYF1 753 aaPredicted RBP12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 PDCD7Q8N8D1 485 aaKnown RBP12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 FAM149B1Q96BN6 582 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 SLC6A18Q96N87 628 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 ELF4Q99607 663 aaPredicted RBP12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 OMDQ99983 421 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 MIS12Q9H081 205 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 NEUROG2Q9H2A3 272 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 FTSJ1Q9UET6 329 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 SERGEFQ9UGK8 458 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 CNTN6Q9UQ52 1028 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 ERVW-1Q9UQF0 538 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 RAXQ9Y2V3 346 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 NUMA1Q14980 2115 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 PLXNB3Q9ULL4 1909 aa12.43□□□□□ -0.42
CBX3P4-202ENST00000540428 TRABD2BA6NFA1 517 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms