RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 DNALI1O14645 258 aaPredicted RBP17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 RPL22P35268 128 aaKnown RBP17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 CGB2Q6NT52 195 aa17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 OTOP2Q7RTS6 562 aa17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 NETO2Q8NC67 525 aa17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 TKTL2Q9H0I9 626 aa17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 RC3H2Q9HBD1 1191 aaKnown RBP17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 SNX10Q9Y5X0 201 aa17.6■□□□□ 0.41
PCDHB17P-201ENST00000539533 A8MUI8 341 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 CCND1P24385 295 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 C11orf91Q3C1V1 193 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 ARHGEF18Q6ZSZ5 1173 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 BZW1Q7L1Q6 419 aaKnown RBP17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 BEND5Q7L4P6 421 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 RNF168Q8IYW5 571 aaPredicted RBP17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 TMEM199Q8N511 208 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 BBOF1Q8ND07 529 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 SPPL2BQ8TCT7 592 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 MAGEB18Q96M61 343 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 USP29Q9HBJ7 922 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 NKIRAS1Q9NYS0 192 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 RCOR3Q9P2K3 495 aaPredicted RBP17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 TBK1Q9UHD2 729 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 SCML2Q9UQR0 700 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 WDR27A2RRH5 827 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 IGLV3-25P01717 112 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 RBL1P28749 1068 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 SCAPQ12770 1279 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 BTG3Q14201 252 aaPredicted RBP17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 DENND5BQ6ZUT9 1274 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 SRRM1Q8IYB3 904 aaKnown RBP17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 ARMC2Q8NEN0 867 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 CASP10Q92851 521 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 RNF34Q969K3 372 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 KLHL14Q9P2G3 628 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 TRIM33Q9UPN9 1127 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 STK38LQ9Y2H1 464 aa17.59■□□□□ 0.41
PCDHB17P-201ENST00000539533 MYO16Q9Y6X6 1858 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 H3BRJ5 948 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 EEF2KO00418 725 aaKnown RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 MSI1O43347 362 aaKnown RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 CDH16O75309 829 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 ZFXP17010 805 aaPredicted RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 STIP1P31948 543 aaKnown RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 OR1D2P34982 312 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 MSH2P43246 934 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 AIF1P55008 147 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 MGAT5Q09328 741 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 EIF4EBP2Q13542 120 aaPredicted RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 PSMD5Q16401 504 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 ARL13BQ3SXY8 428 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 RNF43Q68DV7 783 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 KIAA1841Q6NSI8 718 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 MON1AQ86VX9 555 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 TRIM62Q9BVG3 475 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 FBXO44Q9H4M3 255 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 DTLQ9NZJ0 730 aa17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 MRPL42Q9Y6G3 142 aaKnown RBP17.58■□□□□ 0.41
PCDHB17P-201ENST00000539533 KCNN4O15554 427 aa17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 HAPLN1P10915 354 aaPredicted RBP17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 SEMA3BQ13214 749 aa17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 RFX8Q6ZV50 586 aa17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 GMIPQ9P107 970 aa17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 MTRRQ9UBK8 725 aa17.58■□□□□ 0.4
PCDHB17P-201ENST00000539533 CCNB1P14635 433 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 SARNPP82979 210 aaKnown RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 RNASEH2BQ5TBB1 312 aaKnown RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 SLC8B1Q6J4K2 584 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 PPP1R21Q6ZMI0 780 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 C16orf59Q7L2K0 433 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 GIPC2Q8TF65 315 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 ZNF558Q96NG5 402 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 KIF9Q9HAQ2 790 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 IL37Q9NZH6 218 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 HGSO14964 777 aaPredicted RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 IRAK2O43187 625 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 EN2P19622 333 aaPredicted RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 TAC1P20366 129 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 YWHAQP27348 245 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 SKIV2L2P42285 1042 aaKnown RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 NR2C2P49116 596 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 DPYSQ14117 519 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 SLC39A11Q8N1S5 342 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 ZNF483Q8TF39 744 aaPredicted RBP17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 GRAMD1AQ96CP6 724 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 ZNF570Q96NI8 536 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 CLSTN3Q9BQT9 956 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 SMOC2Q9H3U7 446 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 OR12D3Q9UGF7 316 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 NR2E3Q9Y5X4 410 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 ACTL7BQ9Y614 415 aa17.57■□□□□ 0.4
PCDHB17P-201ENST00000539533 BCLAF3A2AJT9 711 aaKnown RBP17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 MFSD11O43934 449 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 DIAPH2O60879 1101 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 CDC25CP30307 473 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 FOXN2P32314 431 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 PEX19P40855 299 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 CCDC15Q0P6D6 951 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 SMARCB1Q12824 385 aa17.56■□□□□ 0.4
PCDHB17P-201ENST00000539533 STAT4Q14765 748 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms