RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FAM129AQ9BZQ8 928 aa12.37□□□□□ -0.43
CLIP1-208ENST00000537004 DLGAP2Q9P1A6 1054 aa12.37□□□□□ -0.43
CLIP1-208ENST00000537004 WHRNQ9P202 907 aa12.37□□□□□ -0.43
CLIP1-208ENST00000537004 MTRF1LQ9UGC7 380 aaKnown RBP12.37□□□□□ -0.43
CLIP1-208ENST00000537004 ASIC3Q9UHC3 531 aa12.37□□□□□ -0.43
CLIP1-208ENST00000537004 PIAS3Q9Y6X2 628 aa12.37□□□□□ -0.43
CLIP1-208ENST00000537004 ZNF840PA6NDX5 716 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 OTOL1A6NHN0 477 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 C3orf70A6NLC5 250 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 TNFRSF10BO14763 440 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 SCAMP3O14828 347 aaKnown RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 CHADO15335 359 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 GALR2O43603 387 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 GPD1P21695 349 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 TARSP26639 723 aaKnown RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 PLA2G5P39877 138 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 SLC5A3P53794 718 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 KCNT1Q5JUK3 1230 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 SPDYCQ5MJ68 293 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 CEP85LQ5SZL2 805 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 TRNP1Q6NT89 227 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 GPRIN1Q7Z2K8 1008 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 CELF5Q8N6W0 485 aaKnown RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 FAM76AQ8TAV0 307 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 FAM122AQ96E09 287 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 SMARCD1Q96GM5 515 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 SHDQ96IW2 340 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 TTLL2Q9BWV7 592 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 RNF38Q9H0F5 515 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 DMAP1Q9NPF5 467 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 ASNSD1Q9NWL6 643 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 NDRG2Q9UN36 371 aaKnown RBP12.36□□□□□ -0.43
CLIP1-208ENST00000537004 NFS1Q9Y697 457 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 KMT2EQ8IZD2 1858 aa12.36□□□□□ -0.43
CLIP1-208ENST00000537004 C2CD4BA6NLJ0 364 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 GRAP2O75791 330 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 HDCP19113 662 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 IVDP26440 423 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 MIPP30301 263 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 SNX16P57768 344 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PRKCQQ04759 706 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 TRIP13Q15645 432 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-208ENST00000537004 TXNDC11Q6PKC3 985 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 OLFML1Q6UWY5 402 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 TMEM110Q86TL2 294 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 NUP93Q8N1F7 819 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 OR2W6PQ8NHA6 318 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 STK32AQ8WU08 396 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 DNASE1L2Q92874 299 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 E2F7Q96AV8 911 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 SNF8Q96H20 258 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 CNPY3Q9BT09 278 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 DNAI2Q9GZS0 605 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 LTB4R2Q9NPC1 389 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 GKN1Q9NS71 199 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PSD3Q9NYI0 1048 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 TRPM5Q9NZQ8 1165 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PCSK1NQ9UHG2 260 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 NEU2Q9Y3R4 380 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PTPRDP23468 1912 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 LIASO43766 372 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PDGFRAP16234 1089 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 ITIH2P19823 946 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 DDX6P26196 483 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP1-208ENST00000537004 WEE1P30291 646 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PCK1P35558 622 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 PMS2P54278 862 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 BCAT1P54687 386 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 SLC6A3Q01959 620 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 ZNF844Q08AG5 666 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 BST2Q10589 180 aaKnown RBP12.35□□□□□ -0.43
CLIP1-208ENST00000537004 FZD5Q13467 585 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 BYSLQ13895 437 aaKnown RBP12.35□□□□□ -0.43
CLIP1-208ENST00000537004 ZNF852Q6ZMS4 543 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 CLEC20AQ6ZU45 233 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 SCUBE3Q8IX30 993 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 ANKRD52Q8NB46 1076 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 DTWD2Q8NBA8 298 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 RXFP2Q8WXD0 754 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 FBXO32Q969P5 355 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 EBF3Q9H4W6 596 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 SMPD4Q9NXE4 827 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 DNPEPQ9ULA0 475 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 USP18Q9UMW8 372 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 EFR3BQ9Y2G0 817 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 ARIH1Q9Y4X5 557 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-208ENST00000537004 CACNA1IQ9P0X4 2223 aa12.35□□□□□ -0.43
CLIP1-208ENST00000537004 TRAV19A0A0A6YYK7 116 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 GOLGA6L10A6NI86 522 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 TP73O15350 636 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 PAPSS1O43252 624 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 GABBR2O75899 941 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 TRUB2O95900 331 aaKnown RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 FAM200BP0CF97 657 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 ARSAP15289 507 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 KDELR1P24390 212 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 YWHAQP27348 245 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 ADCY8P40145 1251 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 LMAN1P49257 510 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms