RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 CCT8P50990 548 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 PLK1P53350 603 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 MARSP56192 900 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 MTA1Q13330 715 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 SLC12A1Q13621 1099 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 FOXD4L6Q3SYB3 417 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 FOXD4L5Q5VV16 416 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 ZNF776Q68DI1 518 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 FOXD4L3Q6VB84 417 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 TMPRSS12Q86WS5 348 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 SIX6OS1Q8N1H7 587 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 PDCD7Q8N8D1 485 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 HJURPQ8NCD3 748 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 RHBDD1Q8TEB9 315 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 FOXD4L4Q8WXT5 416 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 TFAP2BQ92481 460 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 FCRL2Q96LA5 508 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 PABPC3Q9H361 631 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 KDM4CQ9H3R0 1056 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 SFMBT1Q9UHJ3 866 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 INTS6Q9UL03 887 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 SNX11Q9Y5W9 270 aa11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 SETXQ7Z333 2677 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-206ENST00000535668 LTFP02788 710 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 DNTTP04053 509 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 HMBSP08397 361 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 HLA-EP13747 358 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 HOXB3P14651 431 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 POLR2EP19388 210 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 SLC6A4P31645 630 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 GPD2P43304 727 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 FMO5P49326 533 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 ARID5AQ03989 594 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 OVGP1Q12889 678 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 INAVAQ3KP66 663 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 MS4A13Q5J8X5 152 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 C9orf64Q5T6V5 341 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 KIAA0895LQ68EN5 471 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 ANKRD40Q6AI12 368 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 NADSYN1Q6IA69 706 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 TMEM110Q86TL2 294 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 IQCHQ86VS3 1027 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 WFDC5Q8TCV5 224 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 TSC1Q92574 1164 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 DHTKD1Q96HY7 919 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 SERPINB11Q96P15 392 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 FAM129BQ96TA1 746 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 SLC4A5Q9BY07 1137 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 ASH1LQ9NR48 2969 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 TMEM51Q9NW97 253 aa11.64□□□□□ -0.55
CLSTN3-206ENST00000535668 A0A1W2PR77 199 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SLC7A4O43246 635 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 CD70P32970 193 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 ACADSBP45954 432 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SGSHP51688 502 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 PMS1P54277 932 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 GALCP54803 685 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 TBX4P57082 545 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 ILKQ13418 452 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 COL9A2Q14055 689 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 FNDC3BQ53EP0 1204 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SOWAHCQ53LP3 525 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SFMBT2Q5VUG0 894 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 PNPLA1Q8N8W4 532 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 LSM14AQ8ND56 463 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 OR2T34Q8NGX1 318 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SAP25Q8TEE9 199 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SETD7Q8WTS6 366 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 CYB5D2Q8WUJ1 264 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 RFFLQ8WZ73 363 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 NDRG1Q92597 394 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 EDEM1Q92611 657 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 SKA1Q96BD8 255 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 PRICKLE1Q96MT3 831 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 ELF4Q99607 663 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 TSG101Q99816 390 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 MIR1-1HGQ9H1L0 117 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 BTBD3Q9Y2F9 522 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 BPTFQ12830 3046 aa11.63□□□□□ -0.55
CLSTN3-206ENST00000535668 EDDM13A0A1B0GTR0 161 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 H0Y8X5 98 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 RNF225M0QZC1 329 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 MSI1O43347 362 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 RNASEH1O60930 286 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 GLI1P08151 1106 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 GOT1P17174 413 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 C5AR1P21730 350 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 CSKP41240 450 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 OXCT1P55809 520 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 SULT2A1Q06520 285 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 KCNJ12Q14500 433 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 ELAVL3Q14576 367 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 SHBQ15464 509 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 CST6Q15828 149 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 C5orf22Q49AR2 442 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 KCNT1Q5JUK3 1230 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 TMEM270Q6UE05 265 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 KANSL1Q7Z3B3 1105 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 PDZD3Q86UT5 571 aa11.62□□□□□ -0.55
CLSTN3-206ENST00000535668 MFN1Q8IWA4 741 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms