RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 PCDHGC3Q9UN70 934 aa16.76■□□□□ 0.27
CLSTN3-204ENST00000535313 CEP83Q9Y592 693 aa16.76■□□□□ 0.27
CLSTN3-204ENST00000535313 PCDH15Q96QU1 1955 aa16.76■□□□□ 0.27
CLSTN3-204ENST00000535313 PCNX2A6NKB5 2137 aa16.76■□□□□ 0.27
CLSTN3-204ENST00000535313 F5H5T6 163 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 IGLV3-25P01717 112 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 C7P10643 843 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC2A3P11169 496 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 TACR2P21452 398 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 KRT9P35527 623 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 RPS14P62263 151 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC14A1Q13336 389 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 HNRNPDQ14103 355 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 TAF5Q15542 800 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 PITRM1Q5JRX3 1037 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 ZNF776Q68DI1 518 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 RNF34Q969K3 372 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 CPXM1Q96SM3 734 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 BTBD1Q9H0C5 482 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 ASNSD1Q9NWL6 643 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 EIF2B4Q9UI10 523 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 DNAJC12Q9UKB3 198 aa16.75■□□□□ 0.27
CLSTN3-204ENST00000535313 KMT2BQ9UMN6 2715 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SYNJ2BP-COX16A0A087WUM0 186 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SPAARA0A1B0GVQ0 90 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 KCNU1A8MYU2 1149 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 RNASEH1O60930 286 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 HSF2BPO75031 334 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SEMA4FO95754 770 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 CD59P13987 128 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 PRKCSHP14314 528 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 ABCB4P21439 1286 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 ERCC5P28715 1186 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 CCR1P32246 355 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 ACSL1P33121 698 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 RDXP35241 583 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 ANP32AP39687 249 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SIM1P81133 766 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SFSWAPQ12872 951 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 VWA3BQ502W6 1294 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 FSCBQ5H9T9 825 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 RNF219Q5W0B1 726 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 OR6B2Q6IFH4 312 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 MMS22LQ6ZRQ5 1243 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 C11orf57Q6ZUT1 292 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 DEFB106AQ8N104 65 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 WDTC1Q8N5D0 677 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 KDM1BQ8NB78 822 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 GANCQ8TET4 914 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC2A13Q96QE2 648 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 NDST4Q9H3R1 872 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 C6orf106Q9H6K1 298 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 SYNCQ9H7C4 482 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 DDIT4Q9NX09 232 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 COX16Q9P0S2 106 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 INTS6Q9UL03 887 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 ERVW-1Q9UQF0 538 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 NCKAP1Q9Y2A7 1128 aa16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 MUC22E2RYF6 1773 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-204ENST00000535313 FOXN3O00409 490 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 GRAP2O75791 330 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 SRPRAP08240 638 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 BPIFB4P59827 614 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 PITX1P78337 314 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 ECT2LQ008S8 904 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 MTA1Q13330 715 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 HNRNPA1L2Q32P51 320 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 DPCR1Q3MIW9 517 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 RABGAP1LQ5R372 815 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 IL27RAQ6UWB1 636 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 C1orf131Q8NDD1 294 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 MYO19Q96H55 970 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 TUBGCP2Q9BSJ2 902 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 NUP62CLQ9H1M0 184 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 RSPH9Q9H1X1 276 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 PDCL3Q9H2J4 239 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 MTG2Q9H4K7 406 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 SGK2Q9HBY8 427 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 SIX2Q9NPC8 291 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 SCML1Q9UN30 329 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 USP24Q9UPU5 2620 aa16.73■□□□□ 0.27
CLSTN3-204ENST00000535313 NUMA1Q14980 2115 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 TARSL2A2RTX5 802 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 PES1O00541 588 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 SIN3BO75182 1162 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 GJB3O75712 270 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 CER1O95813 267 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 CLCN1P35523 988 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 EIF4EBP2Q13542 120 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC12A1Q13621 1099 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 ARID5BQ14865 1188 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 TTC39BQ5VTQ0 682 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 FAM183BPQ6ZVS7 135 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC47A2Q86VL8 602 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 DHX40Q8IX18 779 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 MRGPRX3Q96LB0 322 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 PABPC3Q9H361 631 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 AJAP1Q9UKB5 411 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 WASF3Q9UPY6 502 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms