RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PHKG1Q16816 387 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 GRAMD1BQ3KR37 738 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ODR4Q5SWX8 454 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 PRAMEF18Q5VWM3 479 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 SPOPLQ6IQ16 392 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 C4orf22Q6V702 233 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 MACC1Q6ZN28 852 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 BRINP3Q76B58 766 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 FASTKD5Q7L8L6 764 aaKnown RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 DPP9Q86TI2 863 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 STX12Q86Y82 276 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 CLVS1Q8IUQ0 354 aaPredicted RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 MB21D2Q8IYB1 491 aaPredicted RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 EFHBQ8N7U6 833 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 MARCH10Q8NA82 808 aaPredicted RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 KCNH5Q8NCM2 988 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 HIPK4Q8NE63 616 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 EXD1Q8NHP7 514 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 DNAJC9Q8WXX5 260 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 CAVIN3Q969G5 261 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 DACT3Q96B18 629 aaPredicted RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 HDAC11Q96DB2 347 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ERLEC1Q96DZ1 483 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 CYFIP2Q96F07 1278 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 CNDP2Q96KP4 475 aaKnown RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 ATP6V1G3Q96LB4 118 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 HS6ST2Q96MM7 605 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 TMEM237Q96Q45 408 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 CCDC77Q9BR77 488 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 AMNQ9BXJ7 453 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 LSG1Q9H089 658 aaKnown RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 DDX47Q9H0S4 455 aaKnown RBP5.7□□□□□ -1.5
CD44-236ENST00000533222 NUP62CLQ9H1M0 184 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 RNPEPL1Q9HAU8 725 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 NEK6Q9HC98 313 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 IL1RAPL2Q9NP60 686 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 WASH6PQ9NQA3 447 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ARHGEF3Q9NR81 526 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 FAM114A2Q9NRY5 505 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 GPRC5BQ9NZH0 403 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 DNAJB4Q9UDY4 337 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ZFP69BQ9UJL9 534 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 NUP50Q9UKX7 468 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 INTUQ9ULD6 942 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 PCDHA12Q9UN75 941 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ERVK-11Q9UQG0 969 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 B3GNT3Q9Y2A9 372 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 MED16Q9Y2X0 877 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 UHRF1BP1Q6BDS2 1440 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 FRMPD4Q14CM0 1322 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 ITIH6Q6UXX5 1313 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 MBD5Q9P267 1494 aa5.7□□□□□ -1.5
CD44-236ENST00000533222 OVOS2A0A0G2JMS6 1433 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 OVOS2A0A0J9YW53 1432 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 RGS12O14924 1447 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 OVOS2Q6IE36 1432 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 A0A0A6YYJ9 748 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 A0A1B0GWJ7 208 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CTAGE15A4D2H0 777 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SLC9B1P1A6NJY1 282 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 GOLGA8JA6NMD2 632 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 PRSS47A8MTI9 375 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SLCO1B7G3V0H7 640 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 AGPSO00116 658 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SLC9A3R1O14745 358 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 FFAR3O14843 346 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 POLR1CO15160 346 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 HOXC11O43248 304 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 TRAPPC3O43617 180 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CCNT1O60563 726 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 CLN5O75503 358 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CRTAPO75718 401 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 RSL1D1O76021 490 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 USP1O94782 785 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 HRGP04196 525 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 GNAI3P08754 354 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SNRPAP09012 282 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 CTAGE8P0CG41 777 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 NQO1P15559 274 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 STMN1P16949 149 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SOX6P35712 828 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SARSP49591 514 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 BCAP31P51572 246 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 STAT2P52630 851 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 GNG2P59768 71 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SMAD3P84022 425 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 FCHO2Q0JRZ9 810 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 COASYQ13057 564 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SMAD2Q15796 467 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 ASIC2Q16515 512 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 FAM76BQ5HYJ3 339 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CLVS2Q5SYC1 327 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TPGS2Q68CL5 300 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ATL3Q6DD88 541 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SLC4A10Q6U841 1118 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 RFPL4BQ6ZWI9 263 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 MARK2Q7KZI7 788 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 KCTD20Q7Z5Y7 419 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CTAGE6Q86UF2 777 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 P3H2Q8IVL5 708 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms