RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CBWD1Q9BRT8 395 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 MED10Q9BTT4 135 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 ERVMER34-1Q9H9K5 563 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 PRSS16Q9NQE7 514 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 NUDT5Q9UKK9 219 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 EXOC7Q9UPT5 735 aa8.61□□□□□ -1.03
CD44-232ENST00000531118 UTP20O75691 2785 aaKnown RBP8.61□□□□□ -1.03
CD44-232ENST00000531118 ZFC3H1O60293 1989 aaKnown RBP8.61□□□□□ -1.03
CD44-232ENST00000531118 LRRK1Q38SD2 2015 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PMS2P1A4D2B8 440 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 VWA3AA6NCI4 1184 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 LRRC72A6NJI9 287 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 CDRT15L2A8MXV6 281 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 TLR4O00206 839 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PPFIA2O75334 1257 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 KLKB1P03952 638 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 RBMS1P29558 406 aaKnown RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 CORO1AP31146 461 aaKnown RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 GALCP54803 685 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PPP2CBP62714 309 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PPP2CAP67775 309 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 ZNF211Q13398 564 aaPredicted RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 KCNJ12Q14500 433 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 SGO2Q562F6 1265 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 HIST2H2BCQ6DN03 193 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 NAPEPLDQ6IQ20 393 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 ZNF720Q7Z2F6 126 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 GPRIN1Q7Z2K8 1008 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 CLEC14AQ86T13 490 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 FBXO18Q8NFZ0 1043 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 OR2T34Q8NGX1 318 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 OR4C6Q8NH72 309 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 GANCQ8TET4 914 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 RAD54LQ92698 747 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 GLMNQ92990 594 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 HPS3Q969F9 1004 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PRR11Q96HE9 360 aaPredicted RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 SERAC1Q96JX3 654 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 PSMG3-AS1Q96PY0 264 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 ACCSQ96QU6 501 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 CCNL2Q96S94 520 aaPredicted RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 SMOQ99835 787 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 STRA6Q9BX79 667 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 RSPH9Q9H1X1 276 aaPredicted RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 EPN3Q9H201 632 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 FBXO44Q9H4M3 255 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 NMUR1Q9HB89 426 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.6□□□□□ -1.03
CD44-232ENST00000531118 ATXN7L1Q9ULK2 861 aaPredicted RBP8.6□□□□□ -1.03
CD44-232ENST00000531118 ZNF510Q9Y2H8 683 aa8.6□□□□□ -1.03
CD44-232ENST00000531118 UBE4BO95155 1302 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 A0A1W2PP55 124 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 A0A1W2PQH9 124 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 BLACEA4D250 179 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CAPN5O15484 640 aaPredicted RBP8.59□□□□□ -1.03
CD44-232ENST00000531118 SLC26A4O43511 780 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 BEST1O76090 585 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 PRPF6O94906 941 aaKnown RBP8.59□□□□□ -1.03
CD44-232ENST00000531118 CYBBP04839 570 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 ITGB2P05107 769 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 GP1BAP07359 652 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CKMT1AP12532 417 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 RARGP13631 454 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 HOXD9P28356 352 aaPredicted RBP8.59□□□□□ -1.03
CD44-232ENST00000531118 HLA-FP30511 346 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CHKAP35790 457 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 AFMP43652 599 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 PLA2G4AP47712 749 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CCR5P51681 352 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 RAB15P59190 212 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 ISXQ2M1V0 245 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 C10orf120Q5SQS8 335 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CHST9Q7L1S5 443 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CENPQQ7L2Z9 268 aaPredicted RBP8.59□□□□□ -1.03
CD44-232ENST00000531118 TMC6Q7Z403 805 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 WDR49Q8IV35 697 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 ZC3H3Q8IXZ2 948 aaKnown RBP8.59□□□□□ -1.03
CD44-232ENST00000531118 FUKQ8N0W3 1084 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 GPD1LQ8N335 351 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 CPXM2Q8N436 756 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 FAM26EQ8N5C1 309 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SLC46A1Q96NT5 459 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SEMA3CQ99985 751 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SLC2A11Q9BYW1 496 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 PCIF1Q9H4Z3 704 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SMYD3Q9H7B4 428 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 FBXL12Q9NXK8 326 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 RASAL2Q9UJF2 1139 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SCML1Q9UN30 329 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 SCML2Q9UQR0 700 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 NCKAP1Q9Y2A7 1128 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 PCDHGA8Q9Y5G5 932 aa8.59□□□□□ -1.03
CD44-232ENST00000531118 LY6G6EA0A0G2JKS1 128 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 MID1O15344 667 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 FFAR2O15552 330 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 TIMM44O43615 452 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 RNASEH2AO75792 299 aaKnown RBP8.58□□□□□ -1.04
CD44-232ENST00000531118 HMBSP08397 361 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 FAM163BP0C2L3 166 aa8.58□□□□□ -1.04
CD44-232ENST00000531118 CCDC130P13994 396 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms