RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SYN2Q92777 582 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 NT5C1BQ96P26 610 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ACAP3Q96P50 834 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 ADPGKQ9BRR6 497 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.41□□□□□ -1.7
CD44-226ENST00000527889 CDADC1Q9BWV3 514 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 EIF2AQ9BY44 585 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 STK33Q9BYT3 514 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 GCOM2Q9BZD3 368 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 MTMR12Q9C0I1 747 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 GPR88Q9GZN0 384 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 RNF38Q9H0F5 515 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CXCL16Q9H2A7 254 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 TRIT1Q9H3H1 467 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 DEF6Q9H4E7 631 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 HAUS4Q9H6D7 363 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 RPF1Q9H9Y2 349 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 KCND1Q9NSA2 647 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 TRMT13Q9NUP7 481 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 RAB20Q9NX57 234 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 AIPL1Q9NZN9 384 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 STOML1Q9UBI4 398 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 POLG2Q9UHN1 485 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 FBXL5Q9UKA1 691 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CPSF3Q9UKF6 684 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 PIN4Q9Y237 131 aaKnown RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 LZTS1Q9Y250 596 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 COQ4Q9Y3A0 265 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 HES2Q9Y543 173 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 PCDHA11Q9Y5I1 949 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 TRPV2Q9Y5S1 764 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 B3GALT1Q9Y5Z6 326 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 CDY2AQ9Y6F7 541 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 MROH7Q68CQ1 1323 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 KIF26AQ9ULI4 1882 aaPredicted RBP4.41□□□□□ -1.7
CD44-226ENST00000527889 USP34Q70CQ2 3546 aa4.41□□□□□ -1.7
CD44-226ENST00000527889 MYLKQ15746 1914 aa4.4□□□□□ -1.7
CD44-226ENST00000527889 C2orf16Q68DN1 1984 aa4.4□□□□□ -1.7
CD44-226ENST00000527889 CHD5Q8TDI0 1954 aa4.4□□□□□ -1.7
CD44-226ENST00000527889 C5orf42Q9H799 3197 aa4.4□□□□□ -1.7
CD44-226ENST00000527889 NOTCH4Q99466 2003 aa4.4□□□□□ -1.7
CD44-226ENST00000527889 A0A087X0T9 212 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 LOC100996750A0A140TA64 210 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 A0A1B0GUA9 196 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SSU72P8A0A1W2PR75 194 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TMCO5BA8MYB1 307 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 EIF3CLB5ME19 914 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 M0QZ92 97 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TPP1O14773 563 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CCP110O43303 1012 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 KIF5CO60282 957 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 RECQL4O94761 1208 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 MTA2O94776 668 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 IL18RAPO95256 599 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SGPL1O95470 568 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ZBED1O96006 694 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TNNC2P02585 160 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CHRNA1P02708 482 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 HRGP04196 525 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 POU2F2P09086 479 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CLTAP09496 248 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TMEM191BP0C7N4 346 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 FAM228BP0C875 321 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 MCF2P10911 925 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 COL6A2P12110 1019 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 FERP16591 822 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 THPOP40225 353 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 PRKCIP41743 596 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ARHGAP25P42331 645 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ACLYP53396 1101 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CRYBB1P53674 252 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 PRMT2P55345 433 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 MYL6P60660 151 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 GNG11P61952 73 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 NOP14P78316 857 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 NKX3-2P78367 333 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SRSF2Q01130 221 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 NHLH1Q02575 133 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 GFPT1Q06210 699 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 ENPEPQ07075 957 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ITGA7Q13683 1181 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TMEM132DQ14C87 1099 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SPA17Q15506 151 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SURF1Q15526 300 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ASTE1Q2TB18 679 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 GAB4Q2WGN9 574 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 DCAF4L1Q3SXM0 396 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TAF2Q6P1X5 1199 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 NOTUMQ6P988 496 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 OGFOD3Q6PK18 319 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CYP2R1Q6VVX0 501 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SYT10Q6XYQ8 523 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SCARA5Q6ZMJ2 495 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 RNF111Q6ZNA4 994 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 OTOP3Q7RTS5 596 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 OVCH2Q7RTZ1 564 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TRAPPC11Q7Z392 1133 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ANKRD13BQ86YJ7 626 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 WDR49Q8IV35 697 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CCDC170Q8IYT3 715 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms