RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 LMBR1Q8WVP7 490 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 KAT2BQ92831 832 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PMM1Q92871 262 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 SLC35B4Q969S0 331 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 LRRC45Q96CN5 670 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 IL17RAQ96F46 866 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 CCDC17Q96LX7 622 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ZMAT2Q96NC0 199 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 GSDMAQ96QA5 445 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PDCD2LQ9BRP1 358 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PUS7LQ9H0K6 701 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 BOLA2Q9H3K6 86 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 TMEM165Q9HC07 324 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 XPNPEP3Q9NQH7 507 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ATP8A2Q9NTI2 1148 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ZBTB40Q9NUA8 1239 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 HDAC6Q9UBN7 1215 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 SEL1LQ9UBV2 794 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 CIDEBQ9UHD4 219 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 TRPS1Q9UHF7 1281 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PCSK1NQ9UHG2 260 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PRSS50Q9UI38 385 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 TMCO1Q9UM00 188 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 SORCS3Q9UPU3 1222 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 APOBEC2Q9Y235 224 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 TTLL3Q9Y4R7 772 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PTPRFP10586 1907 aa5.84□□□□□ -1.48
NUP54-218ENST00000515460 TLDC2A0PJX2 215 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TARSL2A2RTX5 802 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 LCHNA4D1U4 455 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ENO4A6NNW6 628 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 A6NNZ2 444 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TBKBP1A7MCY6 615 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 EBAG9O00559 213 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TTI1O43156 1089 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 HOXA3O43365 443 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 PQBP1O60828 265 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 TBCAO75347 108 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 MTA2O94776 668 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 LUC7L3O95232 432 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 SNAI1O95863 264 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 IFIT2P09913 472 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 LTA4HP09960 611 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 RARBP10826 455 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 GYPEP15421 78 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 BPIP17213 487 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CCNCP24863 283 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 SMARCA1P28370 1054 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 SOX5P35711 763 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 FNTAP49354 379 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CDK7P50613 346 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ACLYP53396 1101 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 COL10A1Q03692 680 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 DRP2Q13474 957 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 INAQ16352 499 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TUBB8Q3ZCM7 444 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CEP85LQ5SZL2 805 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CCDC122Q5T0U0 273 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 FAM83BQ5T0W9 1011 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CCDC62Q6P9F0 684 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ANKRD33Q7Z3H0 272 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 C11orf96Q7Z7L8 435 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 PCGF5Q86SE9 256 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 RNF180Q86T96 592 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 RPAP2Q8IXW5 612 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 CYP2W1Q8TAV3 490 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CPT1CQ8TCG5 803 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 GDPD5Q8WTR4 605 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TMX3Q96JJ7 454 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ANKRD27Q96NW4 1050 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CPPED1Q9BRF8 314 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 FDXACB1Q9BRP7 624 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 MLST8Q9BVC4 326 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 INO80BQ9C086 356 aaPredicted RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 ENKD1Q9H0I2 346 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 MS4A5Q9H3V2 200 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ZWILCHQ9H900 591 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 PAG1Q9NWQ8 432 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 TRMT1Q9NXH9 659 aaKnown RBP5.83□□□□□ -1.48
NUP54-218ENST00000515460 UBAP1Q9NZ09 502 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 SEPT10Q9P0V9 454 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 PYCARDQ9ULZ3 195 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 ZNF148Q9UQR1 794 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 SSX2IPQ9Y2D8 614 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 DAAM1Q9Y4D1 1078 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 RIPK3Q9Y572 518 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 SLC4A4Q9Y6R1 1079 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 R4GN57 208 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 DNHD1Q96M86 4753 aa5.83□□□□□ -1.48
NUP54-218ENST00000515460 CCDC194A0A1B0GVG4 234 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 A0A1W2PR48 441 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 SYCE3A1L190 88 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 MYADML2A6NDP7 307 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 F5H6K3 240 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 ADCY6O43306 1168 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 RECQL4O94761 1208 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 TIMP1P01033 207 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 PRB1P04280 392 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 CLEC2LP0C7M8 214 aa5.82□□□□□ -1.48
NUP54-218ENST00000515460 CCDC166P0CW27 439 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms