RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 GPALPP1Q8IXQ4 340 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TBC1D21Q8IYX1 336 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SLC30A5Q8TAD4 765 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PABPC5Q96DU9 382 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 QRFPRQ96P65 431 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TBCBQ99426 244 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ADAM33Q9BZ11 813 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SLC38A7Q9NVC3 462 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 HOXC10Q9NYD6 342 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 COQ6Q9Y2Z9 468 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TNPO3Q9Y5L0 923 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PPP2R3BQ9Y5P8 575 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 CCDC189A1A4V9 331 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 F5H423 210 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 RGS14O43566 566 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 UGT2B11O75310 529 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 KHDRBS3O75525 346 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 IREB2P48200 963 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 RPL10AP62906 217 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 NFIAQ12857 509 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PGS1Q32NB8 556 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 LCN1P1Q5VSP4 162 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SMURF2Q9HAU4 748 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 MIEF1Q9NQG6 463 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PADI4Q9UM07 663 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ST3GAL5Q9UNP4 418 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ADGRL3Q9HAR2 1447 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 GPATCH8Q9UKJ3 1502 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PROSCO94903 275 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PEPDP12955 493 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PPIBP23284 216 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 CBX5P45973 191 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 RPL14P50914 215 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 NME5P56597 212 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 DYNLL1P63167 89 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 RGS1Q08116 209 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TXNDC11Q6PKC3 985 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 OR52L1Q8NGH7 329 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 NAT14Q8WUY8 206 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 YME1L1Q96TA2 773 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 MAP3K14Q99558 947 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 CLPBQ9H078 707 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TBCCD1Q9NVR7 557 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ADAM28Q9UKQ2 775 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 C2CD2LO14523 706 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 PLOD3O60568 738 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CPSF4O95639 269 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 GTF2E2P29084 291 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 ZBTB6Q15916 424 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 LACTB2Q53H82 288 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 N4BP2L1Q5TBK1 243 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 ULK3Q6PHR2 472 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 SPATA2LQ8IUW3 424 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 C12orf56Q8IXR9 622 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 SLC25A41Q8N5S1 370 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 MAGEE2Q8TD90 523 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 DCPSQ96C86 337 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 EMILIN2Q9BXX0 1053 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 MCUBQ9NWR8 336 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 AASSQ9UDR5 926 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 LNPEPQ9UIQ6 1025 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 IKZF3Q9UKT9 509 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 A0A087X1B8 175 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM196BA6NMK8 535 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 FOXN3O00409 490 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CHST10O43529 356 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 S100A3P33764 101 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 GALK1P51570 392 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CCNG1P51959 295 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 ZMYND11Q15326 602 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 GALNT18Q6P9A2 607 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 BPIFB6Q8NFQ5 453 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 IL17REQ8NFR9 667 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 ACTR8Q9H981 624 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 MAGEE1Q9HCI5 957 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 TRMT13Q9NUP7 481 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 DSEQ9UL01 958 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 FANCAO15360 1455 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 MPP2Q14168 576 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 USF2Q15853 346 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 DCP1BQ8IZD4 617 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CAMKK1Q8N5S9 505 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 SMYD1Q8NB12 490 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 OXER1Q8TDS5 423 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 RPRD1AQ96P16 312 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CHST12Q9NRB3 414 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 NUP50Q9UKX7 468 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 GNG14A0A1W2PPG7 69 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 KCNH1O95259 989 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CBX6O95503 412 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 SERPINA6P08185 405 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 HPCAL1P37235 193 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 DRG2P55039 364 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 RPL26P61254 145 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 BHLHB9Q6PI77 547 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 TTC7BQ86TV6 843 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 GATAD2AQ86YP4 633 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 CHPFQ8IZ52 775 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 ATP6V0D2Q8N8Y2 350 aa11.44□□□□□ -0.58
LIMCH1-217ENST00000512946 APOL2Q9BQE5 337 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms