RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	TMEM110	Q86TL2	294 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	UNC45B	Q8IWX7	931 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	CARNMT1	Q8N4J0	409 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	FIBIN	Q8TAL6	211 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	STK32A	Q8WU08	396 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	GOLGA1	Q92805	767 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	FOXJ1	Q92949	421 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	AZIN2	Q96A70	460 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	ORAI3	Q9BRQ5	295 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	MIR1-1HG	Q9H1L0	117 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	PLCB1	Q9NQ66	1216 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	EIF2B4	Q9UI10	523 aa	Known RBP	12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	GOLGA4	Q13439	2230 aa	Known RBP	12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	METTL12	A8MUP2	240 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	UPK3BL1	B0FP48	263 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	UPK3BL2	E5RIL1	263 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	TIMM44	O43615	452 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	OPHN1	O60890	802 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SIN3B	O75182	1162 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	GRAP2	O75791	330 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	LUC7L3	O95232	432 aa	Known RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	ERBB2	P04626	1255 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	ACADM	P11310	421 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	ATXN3	P54252	364 aa	Predicted RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SIM1	P81133	766 aa	Predicted RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	EXOC3L4	Q17RC7	722 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	PITRM1	Q5JRX3	1037 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	MIIP	Q5JXC2	388 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	WDR45B	Q5MNZ6	344 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SYCP2L	Q5T4T6	812 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	FAM183BP	Q6ZVS7	135 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	BEND5	Q7L4P6	421 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	RABEPK	Q7Z6M1	372 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	CHSY1	Q86X52	802 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	CREBRF	Q8IUR6	639 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	APCDD1	Q8J025	514 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	LGI2	Q8N0V4	545 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	C1orf131	Q8NDD1	294 aa	Known RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	CADM4	Q8NFZ8	388 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	TTC17	Q96AE7	1141 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SLC2A13	Q96QE2	648 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	PRMT1	Q99873	361 aa	Known RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SCNM1	Q9BWG6	230 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	CLSTN2	Q9H4D0	955 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	POPDC2	Q9HBU9	364 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	SUSD2	Q9UGT4	822 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	KLK13	Q9UKR3	277 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	FNDC3A	Q9Y2H6	1198 aa	Known RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	CHD5	Q8TDI0	1954 aa		12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	ARID1B	Q8NFD5	2236 aa	Predicted RBP	12.06	□□□□□ -0.48
VTI1A-208	ENST00000494728	BPTF	Q12830	3046 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	SYNJ2BP-COX16	A0A087WUM0	186 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728		A0A1B0GTW7	788 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	GTPBP10	A4D1E9	387 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	TTC34	A8MYJ7	566 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728		I6L893	689 aa	Predicted RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	SART1	O43290	800 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	SH3BP5	O60239	455 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	VAV1	P15498	845 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	POLR2E	P19388	210 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	TFE3	P19532	575 aa	Predicted RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	TACR2	P21452	398 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	OXTR	P30559	389 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	CLCN1	P35523	988 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	USP8	P40818	1118 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	ACADSB	P45954	432 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	STK19	P49842	368 aa	Predicted RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	YWHAZ	P63104	245 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	CENPC	Q03188	943 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	CDH18	Q13634	790 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	HNRNPA1L2	Q32P51	320 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	PTPN20	Q4JDL3	420 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	KCNT1	Q5JUK3	1230 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	CXorf57	Q6NSI4	855 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	OLFML1	Q6UWY5	402 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	UNQ6494/PRO21346	Q6UXR6	183 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	GBP6	Q6ZN66	633 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	ENOSF1	Q7L5Y1	443 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	SLC47A2	Q86VL8	602 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	DHX40	Q8IX18	779 aa	Known RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	DEFB106A	Q8N104	65 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	HDDC3	Q8N4P3	179 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	OR52K2	Q8NGK3	314 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	SNX19	Q92543	992 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	GATA6	Q92908	595 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	NUP58	Q9BVL2	599 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	RSPH9	Q9H1X1	276 aa	Predicted RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	THAP9	Q9H5L6	903 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	FAM204A	Q9H8W3	233 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	ANLN	Q9NQW6	1124 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	COX16	Q9P0S2	106 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	PCDHGC3	Q9UN70	934 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	PLA2G4C	Q9UP65	541 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728	NFE2L3	Q9Y4A8	694 aa		12.05	□□□□□ -0.48
VTI1A-208	ENST00000494728		A0A1B0GVT2	93 aa		12.04	□□□□□ -0.48
VTI1A-208	ENST00000494728	FOXN3	O00409	490 aa	Predicted RBP	12.04	□□□□□ -0.48
VTI1A-208	ENST00000494728	CAPN9	O14815	690 aa		12.04	□□□□□ -0.48
VTI1A-208	ENST00000494728	BCAT2	O15382	392 aa	Predicted RBP	12.04	□□□□□ -0.48
VTI1A-208	ENST00000494728	MED7	O43513	233 aa		12.04	□□□□□ -0.48

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