RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SNRPAP09012 282 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 DHRS4L1P0CG22 281 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 CHRM1P11229 460 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 SKIP12755 728 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 CYP2B6P20813 491 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM72AQ5TYM5 149 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM72DQ6L9T8 149 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM72BQ86X60 149 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 SCUBE1Q8IWY4 988 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 CRYBG2Q8N1P7 616 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 COLGALT1Q8NBJ5 622 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 HTR3CQ8WXA8 447 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 LPPQ93052 612 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 AGAP3Q96P47 875 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 UNKQ9C0B0 810 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 ACADSP16219 412 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 SAT1P21673 171 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 ARL4AP40617 200 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 MRPS35P82673 323 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 PAQR9Q6ZVX9 377 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 ULK2Q8IYT8 1036 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 TFB1MQ8WVM0 346 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 QKIQ96PU8 341 aaKnown RBP eCLIP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 TUBGCP5Q96RT8 1024 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 KCNK16Q96T55 309 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 EBNA1BP2Q99848 306 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 ANLNQ9NQW6 1124 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 GNEQ9Y223 722 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 SNX10Q9Y5X0 201 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 RALGAPA2Q2PPJ7 1873 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 SMIM35A0A1B0GVV1 85 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 NRP1O14786 923 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 KRT37O76014 449 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 MGAT1P26572 445 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 PSMB4P28070 264 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 SATB1Q01826 763 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 OXCT2Q9BYC2 517 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 PIGVQ9NUD9 493 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 TMEM30AQ9NV96 361 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 PNPOQ9NVS9 261 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 FZD10Q9ULW2 581 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 DNAJC16Q9Y2G8 782 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 USP3Q9Y6I4 520 aa16.98■□□□□ 0.31
CCDC88B-210ENST00000494566 GLTPD2A6NH11 291 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PTGESO14684 152 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 GCATO75600 419 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 CTSHP09668 335 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PRKCHP24723 683 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 MATKP42679 507 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PSEN2P49810 448 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PAPOLAP51003 745 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 IRX1P78414 480 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PAN2Q504Q3 1202 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 GPRIN1Q7Z2K8 1008 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM136AQ96C01 138 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 MTBPQ96DY7 904 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PSAT1Q9Y617 370 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 MBLAC1A4D2B0 266 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 RNF103O00237 685 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 ANPEPP15144 967 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PDE1BQ01064 536 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 ATG14Q6ZNE5 492 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 ZDHHC17Q8IUH5 632 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 TNS4Q8IZW8 715 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 RNF148Q8N7C7 305 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 GSDMBQ8TAX9 411 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 RNF139Q8WU17 664 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 GTF3C2Q8WUA4 911 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 AZIN2Q96A70 460 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 P2RY11Q96G91 374 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PNPLA8Q9NP80 782 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 SPECC1L-ADORA2AF8WAN1 911 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 I6L893 689 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 TRAFD1O14545 582 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 CD4P01730 458 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 TSHRP16473 764 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 RASIP1Q5U651 963 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 ANKRD23Q86SG2 305 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 CRLF3Q8IUI8 442 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC7A14Q8TBB6 771 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 ZNF560Q96MR9 790 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PAAF1Q9BRP4 392 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PRDM12Q9H4Q4 367 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 EBF3Q9H4W6 596 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 PLLPQ9Y342 182 aa16.97■□□□□ 0.31
CCDC88B-210ENST00000494566 SPAG6O75602 509 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 CIB2O75838 187 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 MLH1P40692 756 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 MAGEA3P43357 314 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM110CQ1W6H9 321 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM219BQ5XKK7 198 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 CLEC20AQ6ZU45 233 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 UPF1Q92900 1129 aaKnown RBP eCLIP16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 LRRC4Q9HBW1 653 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 LRCH1Q9Y2L9 728 aa16.96■□□□□ 0.31
CCDC88B-210ENST00000494566 GOLGA8TH3BQL2 631 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 OPHN1O60890 802 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 PTPN1P18031 435 aaKnown RBP16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 TKTL1P51854 596 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 SNX16P57768 344 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms