RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 LRRC38Q5VT99 294 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 TMEM159Q96B96 161 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 IGSF6O95976 241 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 PBLDP30039 288 aaPredicted RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 HNRNPH3P31942 346 aaKnown RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 RAD23AP54725 363 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 ZSWIM2Q8NEG5 633 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 LPCAT1Q8NF37 534 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 LNX1Q8TBB1 728 aaPredicted RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 DNAJB3Q8WWF6 145 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 NFKBIZQ9BYH8 718 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 NLNQ9BYT8 704 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 ATP13A1Q9HD20 1204 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 MIEF1Q9NQG6 463 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 ZSCAN32Q9NX65 697 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 SYBUQ9NX95 663 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 C15orf41Q9Y2V0 281 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 GAKO14976 1311 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 FAM58BPP0C7Q3 252 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 RAG1P15918 1043 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 TMED10P49755 219 aaKnown RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 GTF2BQ00403 316 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 SKA1Q96BD8 255 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 ZBTB45Q96K62 511 aaPredicted RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 KCTD14Q9BQ13 255 aaPredicted RBP19.55■□□□□ 0.72
COL27A1-207ENST00000494090 NMRAL1Q9HBL8 299 aa19.55■□□□□ 0.72
COL27A1-207ENST00000494090 MST1RQ04912 1400 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 ZNF839A8K0R7 811 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 F8VP50 259 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CABYRO75952 493 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 ADRA1DP25100 572 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 KRR1Q13601 381 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PGS1Q32NB8 556 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 TLK2Q86UE8 772 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 HASPINQ8TF76 798 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 REPS1Q96D71 796 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 GGA2Q9UJY4 613 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 MROH7Q68CQ1 1323 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PCNAP12004 261 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PAX3P23760 479 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 RXRGP48443 463 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PSEN2P49810 448 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 DRG2P55039 364 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 BTG3Q14201 252 aaPredicted RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 TRIM16LQ309B1 348 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 SCUBE3Q8IX30 993 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 STK32AQ8WU08 396 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 FAM120BQ96EK7 910 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CAPN10Q9HC96 672 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 KCNK4Q9NYG8 393 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 EPHB6O15197 1021 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 SKIV2L2P42285 1042 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PIK3CGP48736 1102 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 SGCGQ13326 291 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 TBCELQ5QJ74 424 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 KCNT2Q6UVM3 1135 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 C15orf52Q6ZUT6 534 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 SLC9A9Q8IVB4 645 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CELF6Q96J87 481 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CEP41Q9BYV8 373 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 XPNPEP3Q9NQH7 507 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PADI4Q9UM07 663 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 SNCAIPQ9Y6H5 919 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 PSMD12O00232 456 aaPredicted RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 TPH1P17752 444 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 TKTP29401 623 aaKnown RBP19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CDH8P55286 799 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 MAMLD1Q13495 774 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 NCF4Q15080 339 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CNGA2Q16280 664 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 DACT2Q5SW24 774 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 FAM71AQ8IYT1 594 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 FUKQ8N0W3 1084 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 GPC2Q8N158 579 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 GDPD5Q8WTR4 605 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 NRDE2Q9H7Z3 1164 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 CROTQ9UKG9 612 aa19.54■□□□□ 0.72
COL27A1-207ENST00000494090 RCCD1A6NED2 376 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 ATP6V1B2P21281 511 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 PANX3Q96QZ0 392 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 PORCNQ9H237 461 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 OSGEPL1Q9H4B0 414 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 CHADO15335 359 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 PCDH8O95206 1070 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 OR56A5P0C7T3 313 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 SOX6P35712 828 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 ATN1P54259 1190 aaPredicted RBP19.53■□□□□ 0.72
COL27A1-207ENST00000494090 SKP1P63208 163 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 USP39Q53GS9 565 aaKnown RBP19.53■□□□□ 0.72
COL27A1-207ENST00000494090 SCARA3Q6AZY7 606 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 LUZP2Q86TE4 346 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 PACS2Q86VP3 889 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 B3GALNT2Q8NCR0 500 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 FAM136AQ96C01 138 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 PARVBQ9HBI1 364 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 TISP43B9A030 160 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 FASP25445 335 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 NR6A1Q15406 480 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 AADACL2Q6P093 401 aa19.53■□□□□ 0.72
COL27A1-207ENST00000494090 ZFP1Q6P2D0 407 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms