RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 VIPAS39Q9H9C1 493 aa13.71□□□□□ -0.21
HDAC3-213ENST00000492506 PNPLA8Q9NP80 782 aa13.71□□□□□ -0.21
HDAC3-213ENST00000492506 CLIC5Q9NZA1 410 aa13.71□□□□□ -0.21
HDAC3-213ENST00000492506 AGO1Q9UL18 857 aaKnown RBP13.71□□□□□ -0.21
HDAC3-213ENST00000492506 ZNF510Q9Y2H8 683 aa13.71□□□□□ -0.21
HDAC3-213ENST00000492506 USP3Q9Y6I4 520 aa13.71□□□□□ -0.21
HDAC3-213ENST00000492506 PLK4O00444 970 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TLX3O43711 291 aaPredicted RBP13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TSPAN3O60637 253 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 EXOC3O60645 756 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 EPHX1P07099 455 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 HLA-EP13747 358 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 CORO1AP31146 461 aaKnown RBP13.7□□□□□ -0.22
HDAC3-213ENST00000492506 CTSKP43235 329 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 DLG4P78352 724 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 SGSM1Q2NKQ1 1148 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 ZACNQ401N2 412 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 SERPINA13PQ6UXR4 307 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TMPRSS12Q86WS5 348 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 FAM217AQ8IXS0 508 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 CPXM2Q8N436 756 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 SNX19Q92543 992 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 BIRC7Q96CA5 298 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 CYFIP2Q96F07 1278 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TMEM245Q9H330 911 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 CUEDC2Q9H467 287 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TRMT1Q9NXH9 659 aaKnown RBP13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TFIP11Q9UBB9 837 aaKnown RBP13.7□□□□□ -0.22
HDAC3-213ENST00000492506 NAGPAQ9UK23 515 aa13.7□□□□□ -0.22
HDAC3-213ENST00000492506 NYNRINQ9P2P1 1898 aaKnown RBP13.7□□□□□ -0.22
HDAC3-213ENST00000492506 TIMM44O43615 452 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 ASS1P00966 412 aaKnown RBP13.69□□□□□ -0.22
HDAC3-213ENST00000492506 CASP1P29466 404 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 EIF2S3P41091 472 aaKnown RBP13.69□□□□□ -0.22
HDAC3-213ENST00000492506 CCT8P50990 548 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 COG7P83436 770 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 INCA1Q0VD86 236 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 E2F5Q15329 346 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 TEAD4Q15561 434 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 FOXD4L6Q3SYB3 417 aaPredicted RBP13.69□□□□□ -0.22
HDAC3-213ENST00000492506 CCDC157Q569K6 752 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 SPOPLQ6IQ16 392 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 FOXD4L3Q6VB84 417 aaPredicted RBP13.69□□□□□ -0.22
HDAC3-213ENST00000492506 UNC13DQ70J99 1090 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 ZBTB9Q96C00 473 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 SLC2A11Q9BYW1 496 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 DCLK3Q9C098 648 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 CIPCQ9C0C6 399 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 LHX5Q9H2C1 402 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 DMAC2Q9NW81 257 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 RAB21Q9UL25 225 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 RAI2Q9Y5P3 530 aa13.69□□□□□ -0.22
HDAC3-213ENST00000492506 MYO18BQ8IUG5 2567 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 SASH3O75995 380 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 URI1O94763 535 aaPredicted RBP13.68□□□□□ -0.22
HDAC3-213ENST00000492506 SEMA4FO95754 770 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 RPN1P04843 607 aaKnown RBP13.68□□□□□ -0.22
HDAC3-213ENST00000492506 IGHV4-34P06331 123 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 HMBSP08397 361 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 P4HA1P13674 534 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 PLA2G2AP14555 144 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 CD27P26842 260 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 MNAT1P51948 309 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 CLDN6P56747 220 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 RPS14P62263 151 aaKnown RBP13.68□□□□□ -0.22
HDAC3-213ENST00000492506 IL9RQ01113 521 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 AMPD3Q01432 767 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 EFEMP1Q12805 493 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 KNOP1Q1ED39 458 aaKnown RBP13.68□□□□□ -0.22
HDAC3-213ENST00000492506 C11orf91Q3C1V1 193 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 C1orf220Q5T0J3 134 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 GBP6Q6ZN66 633 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 SV2AQ7L0J3 742 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 DENND1CQ8IV53 801 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 ZNF366Q8N895 744 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 TMEM174Q8WUU8 243 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 TAF4BQ92750 862 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 DHX58Q96C10 678 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 CARD6Q9BX69 1037 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 SLC39A2Q9NP94 309 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 FTSJ1Q9UET6 329 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 RASAL2Q9UJF2 1139 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 PCDHGA1Q9Y5H4 931 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 DOCK9Q9BZ29 2069 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 NAV2Q8IVL1 2488 aa13.68□□□□□ -0.22
HDAC3-213ENST00000492506 A0A1B0GTQ1 180 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 C10orf142B7Z368 130 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 CBX4O00257 560 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 ARHGAP6O43182 974 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 CLSTN1O94985 981 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 RALAP11233 206 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 HOXD9P28356 352 aaPredicted RBP13.67□□□□□ -0.22
HDAC3-213ENST00000492506 HLA-FP30511 346 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 SHBQ15464 509 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 KIAA0907Q7Z7F0 614 aaPredicted RBP13.67□□□□□ -0.22
HDAC3-213ENST00000492506 ADIPOR2Q86V24 386 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 ZC3H3Q8IXZ2 948 aaKnown RBP13.67□□□□□ -0.22
HDAC3-213ENST00000492506 ZNF843Q8N446 348 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 LINC00301Q8NCQ3 95 aa13.67□□□□□ -0.22
HDAC3-213ENST00000492506 MSANTD4Q8NCY6 345 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms