RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 NCKAP1Q9Y2A7 1128 aa8.54□□□□□ -1.04
USP39-216ENST00000490193 FRMD4BQ9Y2L6 1034 aa8.54□□□□□ -1.04
USP39-216ENST00000490193 RAI2Q9Y5P3 530 aa8.54□□□□□ -1.04
USP39-216ENST00000490193 COL6A6A6NMZ7 2263 aa8.54□□□□□ -1.04
USP39-216ENST00000490193 A0A1W2PR77 199 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 CBX4O00257 560 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 CAPN9O14815 690 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 KIF20AO95235 890 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ZBED1O96006 694 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ITGAVP06756 1048 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 CD58P19256 250 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ABCB4P21439 1286 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 CD38P28907 300 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 EPHA8P29322 1005 aaPredicted RBP8.53□□□□□ -1.04
USP39-216ENST00000490193 RXRGP48443 463 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 CCR5P51681 352 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 VAMP7P51809 220 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 TKTL1P51854 596 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 GALCP54803 685 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 SEMG2Q02383 582 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 PPP3CAQ08209 521 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 DNAJC3Q13217 504 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 KCNJ12Q14500 433 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 HNRNPA1L2Q32P51 320 aaKnown RBP8.53□□□□□ -1.04
USP39-216ENST00000490193 HES3Q5TGS1 186 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 PCSK4Q6UW60 755 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 INTS8Q75QN2 995 aaKnown RBP8.53□□□□□ -1.04
USP39-216ENST00000490193 KANSL1Q7Z3B3 1105 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 GPR155Q7Z3F1 870 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ZNF605Q86T29 641 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 PACS2Q86VP3 889 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 GATAD2AQ86YP4 633 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 FMNL3Q8IVF7 1028 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 SCML4Q8N228 414 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 OXR1Q8N573 874 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ANKRD52Q8NB46 1076 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 SLC4A11Q8NBS3 891 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 OR2T34Q8NGX1 318 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 WFDC5Q8TCV5 224 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 TTC17Q96AE7 1141 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 TMEM176AQ96HP8 235 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 LMLNQ96KR4 655 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ZNF396Q96N95 335 aaPredicted RBP8.53□□□□□ -1.04
USP39-216ENST00000490193 ULBP1Q9BZM6 244 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ERVMER34-1Q9H9K5 563 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 EBF2Q9HAK2 575 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 GDF3Q9NR23 364 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 SERGEFQ9UGK8 458 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 MYO18BQ8IUG5 2567 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 ITIH6Q6UXX5 1313 aa8.53□□□□□ -1.04
USP39-216ENST00000490193 LRRC72A6NJI9 287 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ERVH48-1M5A8F1 160 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 XPO1O14980 1071 aaKnown RBP8.52□□□□□ -1.05
USP39-216ENST00000490193 IRAK2O43187 625 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 LATO43561 262 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 IGLV3-27P01718 113 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ASLP04424 464 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 POLR2EP19388 210 aaKnown RBP8.52□□□□□ -1.05
USP39-216ENST00000490193 GTF2H1P32780 548 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 CD70P32970 193 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 AFMP43652 599 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 GCLMP48507 274 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ARRB1P49407 418 aaPredicted RBP8.52□□□□□ -1.05
USP39-216ENST00000490193 SGSHP51688 502 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 RAD23BP54727 409 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 CLDN6P56747 220 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 SLC8A3P57103 927 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 NXPH1P58417 271 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 TLE3Q04726 772 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 CST6Q15828 149 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ZNF394Q53GI3 561 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 PIK3R6Q5UE93 754 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 RESP18Q5W5W9 173 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 CEP135Q66GS9 1140 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 MSANTD2Q6P1R3 559 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 NCEH1Q6PIU2 408 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ERICH1Q86X53 443 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 FIBINQ8TAL6 211 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 FGF11Q92914 225 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 AZIN2Q96A70 460 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ZNF775Q96BV0 537 aaPredicted RBP8.52□□□□□ -1.05
USP39-216ENST00000490193 WBP1Q96G27 269 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 MRGPRX3Q96LB0 322 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 HEXIM2Q96MH2 286 aaKnown RBP8.52□□□□□ -1.05
USP39-216ENST00000490193 TMEM8AQ9HCN3 771 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 CISHQ9NSE2 258 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 ABCC13Q9NSE7 274 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 EXOC1Q9NV70 894 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 FBXL12Q9NXK8 326 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 FAM13BQ9NYF5 915 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 AK5Q9Y6K8 562 aa8.52□□□□□ -1.05
USP39-216ENST00000490193 TARSL2A2RTX5 802 aaKnown RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 YJEFN3A6XGL0 299 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 E7ENQ6 273 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 WNT9AO14904 365 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 MID1O15344 667 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 ACTN4O43707 911 aaKnown RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 CALUO43852 315 aaPredicted RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 BRINP1O60477 761 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 RNASEH1O60930 286 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms