RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 F7P08709 466 aaPredicted RBP3.72□□□□□ -1.81
SMC4-220ENST00000488017 RFX5P48382 616 aaPredicted RBP3.72□□□□□ -1.81
SMC4-220ENST00000488017 TAF6P49848 677 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 KRTAP10-3P60369 221 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 DCAF12L2Q5VW00 463 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 ZNF449Q6P9G9 518 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 MEX3BQ6ZN04 569 aaKnown RBP3.72□□□□□ -1.81
SMC4-220ENST00000488017 MSLNLQ96KJ4 702 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 LRGUKQ96M69 825 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 NODALQ96S42 347 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 ZNF347Q96SE7 839 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 MAGEH1Q9H213 219 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 CATSPERBQ9H7T0 1116 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 OGDHLQ9ULD0 1010 aa3.72□□□□□ -1.81
SMC4-220ENST00000488017 BMPR1BO00238 502 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 BUB3O43684 328 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 CTNND1O60716 968 aaKnown RBP3.71□□□□□ -1.82
SMC4-220ENST00000488017 PPP6R2O75170 966 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 NFATC1O95644 943 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 MT-ND5P03915 603 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 LCKP06239 509 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 GM2AP17900 193 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 TGM2P21980 687 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 VEGFCP49767 419 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 SELENOVP59797 346 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 TMEM196Q5HYL7 178 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 ABLIM2Q6H8Q1 611 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 SESTD1Q86VW0 696 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 ENGASEQ8NFI3 743 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 ABHD14AQ9BUJ0 271 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 LRRC27Q9C0I9 530 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 ZNF287Q9HBT7 754 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 ZBTB26Q9HCK0 441 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 IGSF9Q9P2J2 1179 aa3.71□□□□□ -1.82
SMC4-220ENST00000488017 CCNT2O60583 730 aaKnown RBP3.7□□□□□ -1.82
SMC4-220ENST00000488017 MYBP10242 640 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 ZNF12P17014 697 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 GPS1Q13098 491 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 FSCBQ5H9T9 825 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 CCDC144NLQ6NUI1 221 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 EPM2AIP1Q7L775 607 aaPredicted RBP3.7□□□□□ -1.82
SMC4-220ENST00000488017 IGSF21Q96ID5 467 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 SNX22Q96L94 193 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 WDR77Q9BQA1 342 aaPredicted RBP3.7□□□□□ -1.82
SMC4-220ENST00000488017 PRDM16Q9HAZ2 1276 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 HEYLQ9NQ87 328 aaPredicted RBP3.7□□□□□ -1.82
SMC4-220ENST00000488017 RNF146Q9NTX7 359 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 TMOD4Q9NZQ9 345 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 B3GNT3Q9Y2A9 372 aa3.7□□□□□ -1.82
SMC4-220ENST00000488017 VWA5AO00534 786 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 ARP10275 920 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 CACNB3P54284 484 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 PMPCAQ10713 525 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 PIN1Q13526 163 aaPredicted RBP3.69□□□□□ -1.82
SMC4-220ENST00000488017 HLFQ16534 295 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 KRT28Q7Z3Y7 464 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 CAMK1DQ8IU85 385 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 FAM216AQ8WUB2 273 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 KAT2AQ92830 837 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 APIPQ96GX9 242 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 PKP4Q99569 1192 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.69□□□□□ -1.82
SMC4-220ENST00000488017 IL21RQ9HBE5 538 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 SDF2L1Q9HCN8 221 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 PCDH12Q9NPG4 1184 aa3.69□□□□□ -1.82
SMC4-220ENST00000488017 MS4A18H0YCH9 400 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 I6L893 689 aaPredicted RBP3.68□□□□□ -1.82
SMC4-220ENST00000488017 NEURL1O76050 574 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 CNTN5O94779 1100 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 MYF5P13349 255 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 SLC5A2P31639 672 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 ATICP31939 592 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 GSTM5P46439 218 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 SLC39A14Q15043 492 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 POLD3Q15054 466 aaPredicted RBP3.68□□□□□ -1.82
SMC4-220ENST00000488017 PLCB4Q15147 1175 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 DUSP6Q16828 381 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 ALG10Q5BKT4 473 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 ALG10BQ5I7T1 473 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 ENTPD8Q5MY95 495 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 PMS2CLQ68D20 193 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 TPH2Q8IWU9 490 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 SRFBP1Q8NEF9 429 aaKnown RBP3.68□□□□□ -1.82
SMC4-220ENST00000488017 BICD2Q8TD16 824 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 RUNDC1Q96C34 613 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 PNRC2Q9NPJ4 139 aaKnown RBP3.68□□□□□ -1.82
SMC4-220ENST00000488017 TBC1D23Q9NUY8 699 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 ZNF180Q9UJW8 692 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 COL4A3BPQ9Y5P4 624 aa3.68□□□□□ -1.82
SMC4-220ENST00000488017 RFPL1O75677 317 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 ALADP13716 330 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 DAOP14920 347 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 GLIPR1P48060 266 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 POLE2P56282 527 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 ILF3Q12906 894 aaKnown RBP eCLIP3.67□□□□□ -1.82
SMC4-220ENST00000488017 CBFBQ13951 182 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 RNF44Q7L0R7 432 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 TCP11L2Q8N4U5 519 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 SLC25A41Q8N5S1 370 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 OR14A16Q8NHC5 309 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms