RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CST6Q15828 149 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 MPP7Q5T2T1 576 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 MSANTD2Q6P1R3 559 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 INTS8Q75QN2 995 aaKnown RBP15.96■□□□□ 0.15
MCF2L-228ENST00000487354 SPATS2Q86XZ4 545 aaKnown RBP15.96■□□□□ 0.15
MCF2L-228ENST00000487354 DHX40Q8IX18 779 aaKnown RBP15.96■□□□□ 0.15
MCF2L-228ENST00000487354 SUN2Q9UH99 717 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 TSPAN16Q9UKR8 245 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 SCML1Q9UN30 329 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 AK5Q9Y6K8 562 aa15.96■□□□□ 0.15
MCF2L-228ENST00000487354 TBL1XO60907 577 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 ATP5BP06576 529 aaKnown RBP15.95■□□□□ 0.14
MCF2L-228ENST00000487354 CDK4P11802 303 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 POLR2EP19388 210 aaKnown RBP15.95■□□□□ 0.14
MCF2L-228ENST00000487354 ABCB4P21439 1286 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 CSKP41240 450 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 CTSOP43234 321 aaPredicted RBP15.95■□□□□ 0.14
MCF2L-228ENST00000487354 CCR5P51681 352 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 ADPRHP54922 357 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 PKDCCQ504Y2 493 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 ZCWPW2Q504Y3 356 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 LRRC69Q6ZNQ3 347 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 MMS22LQ6ZRQ5 1243 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 FAM186BQ8IYM0 893 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 OR2T34Q8NGX1 318 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 FAXDC2Q96IV6 333 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 FAM129BQ96TA1 746 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 FAM13BQ9NYF5 915 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 FZD4Q9ULV1 537 aa15.95■□□□□ 0.14
MCF2L-228ENST00000487354 TDRD6O60522 2096 aaKnown RBP15.95■□□□□ 0.14
MCF2L-228ENST00000487354 ITIH6Q6UXX5 1313 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 TEX51A0A1B0GUA7 166 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 TTC34A8MYJ7 566 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 YKT6O15498 198 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 LATO43561 262 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 CALUO43852 315 aaPredicted RBP15.94■□□□□ 0.14
MCF2L-228ENST00000487354 PRR29P0C7W0 189 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 RXRGP48443 463 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 METAP1P53582 386 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 DAOAP59103 153 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 INSM1Q01101 510 aaPredicted RBP15.94■□□□□ 0.14
MCF2L-228ENST00000487354 PROX2Q3B8N5 592 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 FSCBQ5H9T9 825 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 FOXD4L5Q5VV16 416 aaPredicted RBP15.94■□□□□ 0.14
MCF2L-228ENST00000487354 KRT39Q6A163 491 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 MMAAQ8IVH4 418 aaKnown RBP15.94■□□□□ 0.14
MCF2L-228ENST00000487354 SPACA3Q8IXA5 215 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 CEP57L1Q8IYX8 460 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 CACTIN-AS1Q8N1I8 211 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 SCML4Q8N228 414 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 UBR7Q8N806 425 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 DCBLD1Q8N8Z6 715 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 FIBINQ8TAL6 211 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 FOXD4L4Q8WXT5 416 aaPredicted RBP15.94■□□□□ 0.14
MCF2L-228ENST00000487354 FAM131CQ96AQ9 280 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 EEF2KMTQ96G04 330 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 GDF3Q9NR23 364 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 AASDHPPTQ9NRN7 309 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 NCKAP1Q9Y2A7 1128 aa15.94■□□□□ 0.14
MCF2L-228ENST00000487354 NAV2Q8IVL1 2488 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 RRP8O43159 456 aaKnown RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 RNASEH2AO75792 299 aaKnown RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 GTF2H1P32780 548 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 DRD3P35462 400 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 ME1P48163 572 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 RPS24P62847 133 aaKnown RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 BST2Q10589 180 aaKnown RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 TBC1D25Q3MII6 688 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 FOXD4L6Q3SYB3 417 aaPredicted RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 FOXD4L3Q6VB84 417 aaPredicted RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 GPR155Q7Z3F1 870 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 MFN1Q8IWA4 741 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 KDM1BQ8NB78 822 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 GANCQ8TET4 914 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 KCTD13Q8WZ19 329 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 FGF11Q92914 225 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 IRX2Q9BZI1 471 aaPredicted RBP15.93■□□□□ 0.14
MCF2L-228ENST00000487354 ERVMER34-1Q9H9K5 563 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 ABCC13Q9NSE7 274 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 ARHGAP20Q9P2F6 1191 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 ERVW-1Q9UQF0 538 aa15.93■□□□□ 0.14
MCF2L-228ENST00000487354 LRRC72A6NJI9 287 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 TLR4O00206 839 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 O00370 1275 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 ACSL4O60488 711 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 ACP1P24666 158 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 SLC8A1P32418 973 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 PSMD8P48556 350 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 MXI1P50539 228 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 CCDC173Q0VFZ6 552 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 ILKQ13418 452 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 PITRM1Q5JRX3 1037 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 ZNF605Q86T29 641 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 TTC39CQ8N584 583 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 FBXL13Q8NEE6 735 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 UBA3Q8TBC4 463 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 CLEC4CQ8WTT0 213 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 RNF139Q8WU17 664 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 BAP1Q92560 729 aa15.92■□□□□ 0.14
MCF2L-228ENST00000487354 SERAC1Q96JX3 654 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms