RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 HS3ST3A1Q9Y663 406 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 MSH6P52701 1360 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 TTC21AQ8NDW8 1320 aa4.46□□□□□ -1.69
PTCD3-216ENST00000487043 USP6P35125 1406 aa4.46□□□□□ -1.69
PTCD3-216ENST00000487043 MON2Q7Z3U7 1717 aa4.46□□□□□ -1.69
PTCD3-216ENST00000487043 C1orf167Q5SNV9 1468 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 LOC105369274A0A096LPK9 316 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 LOC102723532A0A0G2JNH3 316 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 A0A1W2PPH5 198 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 KRTAP23-1A1A580 65 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 GAGE12BA1L429 117 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 GAGE12HA6NDE8 117 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 UNC119BA6NIH7 251 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 AGAP5A6NIR3 686 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 MARCH11A6NNE9 402 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 KIAA0355O15063 1070 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 SLC16A3O15427 465 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TSPAN3O60637 253 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 HEXIM1O94992 359 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RTN3O95197 1032 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 FESP07332 822 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RHOP08100 348 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 DDX6P26196 483 aaKnown RBP eCLIP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 PGM1P36871 562 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 FAM3BP58499 235 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 SF3B3Q15393 1217 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TBCCQ15814 346 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 ST3GAL2Q16842 350 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 AAK1Q2M2I8 961 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 BEAN1Q3B7T3 259 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TBRG1Q3YBR2 411 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 AASDHQ4L235 1098 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 SLC45A4Q5BKX6 768 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TREML2Q5T2D2 321 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 FAM90A2PQ658T7 463 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 HAUS3Q68CZ6 603 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 ITPRIPL1Q6GPH6 555 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 GRHL2Q6ISB3 625 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 DPY19L3Q6ZPD9 716 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RASGRP2Q7LDG7 609 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RAB11FIP4Q86YS3 637 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 FAM9BQ8IZU0 186 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 OR4N4Q8N0Y3 316 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 USP38Q8NB14 1042 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TOR1AIP2Q8NFQ8 470 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 MYCBPAPQ8TBZ2 947 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RFFLQ8WZ73 363 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 PTCD3Q96EY7 689 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 COG3Q96JB2 828 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 PAAF1Q9BRP4 392 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 CHCHD6Q9BRQ6 235 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 CD248Q9HCU0 757 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D22BQ9NU19 505 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TRPC5Q9UL62 973 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 HSF4Q9ULV5 492 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RABGAP1Q9Y3P9 1069 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 LAS1LQ9Y4W2 734 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 PCDHB2Q9Y5E7 798 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 PCDHA10Q9Y5I2 948 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 RPS6KL1Q9Y6S9 549 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 XIRP1Q702N8 1843 aaKnown RBP4.46□□□□□ -1.7
PTCD3-216ENST00000487043 MST1RQ04912 1400 aa4.46□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3DA0A087WVF3 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3IA0A087WXS9 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3EA0A087X179 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3KA0A087X1G2 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 GXYLT2A0PJZ3 443 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3BA6NDS4 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3FA6NER0 549 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3LB9A6J9 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 M0QZQ0 153 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SPTLC2O15270 562 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SEPT4O43236 478 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CA12O43570 354 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3HP0C7X1 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TNNT2P45379 298 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 DGKQP52824 942 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 PDE1AP54750 535 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 RBM6P78332 1123 aaKnown RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 ITIH3Q06033 890 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 GALNT2Q10471 571 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TOB2Q14106 344 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 KCNJ12Q14500 433 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 GPR68Q15743 365 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TSTQ16762 297 aaKnown RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 WDR45BQ5MNZ6 344 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3GQ6DHY5 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3CQ6IPX1 549 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CHD1LQ86WJ1 897 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D3Q8IZP1 549 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 PDILTQ8N807 584 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 ANKRD44Q8N8A2 993 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TDRD7Q8NHU6 1098 aaKnown RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SSH3Q8TE77 659 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SOCS4Q8WXH5 440 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 OVCA2Q8WZ82 227 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CENPIQ92674 756 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 EDAQ92838 391 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 FKBP10Q96AY3 582 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms