RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C14orf80Q86SX3 495 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 UCMAQ8WVF2 138 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 SORCS1Q8WY21 1168 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 IGSF8Q969P0 613 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 VCPIP1Q96JH7 1222 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 CACNA2D2Q9NY47 1150 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 ARHGAP20Q9P2F6 1191 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 NCDNQ9UBB6 729 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 MYO1AQ9UBC5 1043 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 CNOT8Q9UFF9 292 aaKnown RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 STARD13Q9Y3M8 1113 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 EML5Q05BV3 1969 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 CCP110O43303 1012 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 MFAP3LO75121 409 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 APBB3O95704 486 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 HOXB2P14652 356 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 HNRNPLP14866 589 aaKnown RBP eCLIP15.24■□□□□ 0.03
USP4-212ENST00000486549 NTSR1P30989 418 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 NUMBP49757 651 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 IRAK1P51617 712 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 ADKP55263 362 aaKnown RBP15.24■□□□□ 0.03
USP4-212ENST00000486549 FOXK2Q01167 660 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 LMAN2Q12907 356 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 CRY1Q16526 586 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 PPP1R15BQ5SWA1 713 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 TMEM215Q68D42 235 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 RNF43Q68DV7 783 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 SDE2Q6IQ49 451 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 ANO7Q6IWH7 933 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 STRADAQ7RTN6 431 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 LONP2Q86WA8 852 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 AHI1Q8N157 1196 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 CCAR2Q8N163 923 aaKnown RBP15.24■□□□□ 0.03
USP4-212ENST00000486549 CAMKK1Q8N5S9 505 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 ZNF557Q8N988 423 aaPredicted RBP15.24■□□□□ 0.03
USP4-212ENST00000486549 SUMF1Q8NBK3 374 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 OR8K1Q8NGG5 319 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 FIBINQ8TAL6 211 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 KCNV2Q8TDN2 545 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 WFIKKN2Q8TEU8 576 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 POLMQ9NP87 494 aaPredicted RBP15.24■□□□□ 0.03
USP4-212ENST00000486549 PARVAQ9NVD7 372 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 ELOVL2Q9NXB9 296 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 GMEB2Q9UKD1 530 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 RAD54BQ9Y620 910 aa15.24■□□□□ 0.03
USP4-212ENST00000486549 MYO15AQ9UKN7 3530 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 A0A087X0T9 212 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 CCDC163A0A0D9SF12 145 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 A0A1B0GVM2 712 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TCRBV21S2A2A0A5A6 115 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TCAF2A6NFQ2 919 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 WASH3PC4AMC7 463 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 ENDOD1O94919 500 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 FAM228BP0C875 321 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 SDHBP21912 280 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 EIF4A3P38919 411 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 DGKEP52429 567 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 ZNF143P52747 638 aaPredicted RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 HDAC4P56524 1084 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 SRSF5Q13243 272 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 MAMLD1Q13495 774 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 EIF4HQ15056 248 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 TSR1Q2NL82 804 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 ARL13BQ3SXY8 428 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 FUT11Q495W5 492 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 FSCBQ5H9T9 825 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TTC39BQ5VTQ0 682 aaPredicted RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 MBLAC2Q68D91 279 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 PLEKHA7Q6IQ23 1121 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP4-212ENST00000486549 CYB5D2Q8WUJ1 264 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TRIM11Q96F44 468 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 DNAJC7Q99615 494 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TPSD1Q9BZJ3 242 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 ISCUQ9H1K1 167 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 ABHD10Q9NUJ1 306 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 TMEM51Q9NW97 253 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 ZNHIT6Q9NWK9 470 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 BCCIPQ9P287 314 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP4-212ENST00000486549 SMG5Q9UPR3 1016 aaKnown RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 STON1Q9Y6Q2 735 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 MUC22E2RYF6 1773 aaPredicted RBP15.23■□□□□ 0.03
USP4-212ENST00000486549 VPS13AQ96RL7 3174 aa15.23■□□□□ 0.03
USP4-212ENST00000486549 AXIN1O15169 862 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 SRGAP2O75044 1071 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 ALDH1A2O94788 518 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 MYBL1P10243 752 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 DESP17661 470 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 POLR2EP19388 210 aaKnown RBP15.22■□□□□ 0.03
USP4-212ENST00000486549 PSMA2P25787 234 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 HNRNPH3P31942 346 aaKnown RBP15.22■□□□□ 0.03
USP4-212ENST00000486549 IL12RB1P42701 662 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 ZNF75DP51815 510 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 OGDHQ02218 1023 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 ZNF234Q14588 700 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 FNDC3BQ53EP0 1204 aaKnown RBP15.22■□□□□ 0.03
USP4-212ENST00000486549 CCDC122Q5T0U0 273 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 SCYL2Q6P3W7 929 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 LRRC31Q6UY01 552 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 ADIPOR2Q86V24 386 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms