RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 TARSL2A2RTX5 802 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 TMEM8BA6NDV4 472 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 BECN2A8MW95 431 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 F5H5T6 163 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 RNASEH1O60930 286 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 HLA-EP13747 358 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 SLC9A1P19634 815 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 PON1P27169 355 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ERCC5P28715 1186 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 CCR1P32246 355 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 MTIF2P46199 727 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 VASPP50552 380 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 AFF3P51826 1226 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 BPIFB4P59827 614 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 RPS24P62847 133 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 CDK17Q00537 523 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 SULT2A1Q06520 285 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 CAMK4Q16566 473 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 TPD52L1Q16890 204 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ZNF423Q2M1K9 1284 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 HNRNPA1L2Q32P51 320 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 SYPL2Q5VXT5 272 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 IRF2BP1Q8IU81 584 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ZDHHC17Q8IUH5 632 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ZCCHC9Q8N567 271 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ERLEC1Q96DZ1 483 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 MYO19Q96H55 970 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 SLC2A13Q96QE2 648 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 CRACR2AQ9BSW2 395 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 ADAM33Q9BZ11 813 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 NUCKS1Q9H1E3 243 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 RSPH9Q9H1X1 276 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 RRN3Q9NYV6 651 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 CYTH4Q9UIA0 394 aa12.56□□□□□ -0.4
SQSTM1-207ENST00000481335 GOLGA6L7A0A1B0GV03 622 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 A0A1B0GVM2 712 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 TCAF2A6NFQ2 919 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 KCNU1A8MYU2 1149 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 SEMA4FO95754 770 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CALCAP01258 141 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 PROS1P07225 676 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CD59P13987 128 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 ABCB4P21439 1286 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 TACR2P21452 398 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CSKP41240 450 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 GRIA4P48058 902 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 RPS14P62263 151 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 FOXC1Q12948 553 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 DCAF6Q58WW2 860 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 RABGAP1LQ5R372 815 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 ACBD5Q5T8D3 534 aaPredicted RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CHSY1Q86X52 802 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CARNMT1Q8N4J0 409 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 C1orf131Q8NDD1 294 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 ZNF397Q8NF99 534 aaPredicted RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 C1orf216Q8TAB5 229 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 PPP1R13BQ96KQ4 1090 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CPXM1Q96SM3 734 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 CLSTN2Q9H4D0 955 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 STIM2Q9P246 746 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 INTS6Q9UL03 887 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 FZD4Q9ULV1 537 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 NCKAP1Q9Y2A7 1128 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 NEUROG3Q9Y4Z2 214 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 PCDHGB2Q9Y5G2 931 aa12.55□□□□□ -0.4
SQSTM1-207ENST00000481335 IGF2RP11717 2491 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 EDDM13A0A1B0GTR0 161 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 MOCS2O96007 188 aaPredicted RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 MAOBP27338 520 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ACSL1P33121 698 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 KRT9P35527 623 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 SCNN1AP37088 669 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 NNMTP40261 264 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 USP8P40818 1118 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 MATKP42679 507 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 PLK1P53350 603 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 SIM1P81133 766 aaPredicted RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ECT2LQ008S8 904 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 TEAD4Q15561 434 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ARHGAP44Q17R89 818 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ZC3H12AQ5D1E8 599 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 PITRM1Q5JRX3 1037 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 RNF219Q5W0B1 726 aaPredicted RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 GJB7Q6PEY0 223 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 OLFML1Q6UWY5 402 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 UNQ6494/PRO21346Q6UXR6 183 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 C11orf57Q6ZUT1 292 aaPredicted RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 SLC26A9Q7LBE3 791 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 GLRX5Q86SX6 157 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 CACUL1Q86Y37 369 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 CREBRFQ8IUR6 639 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 LGI2Q8N0V4 545 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ADAM32Q8TC27 787 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 MRGPRX3Q96LB0 322 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 PRMT1Q99873 361 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 MIR1-1HGQ9H1L0 117 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 PABPC3Q9H361 631 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 NDST4Q9H3R1 872 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 FAM204AQ9H8W3 233 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms