RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TIGD2Q4W5G0 525 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TMEM63BQ5T3F8 832 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 ATF7IPQ6VMQ6 1270 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 CCDC129Q6ZRS4 1044 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 PXKQ7Z7A4 578 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 RPAP2Q8IXW5 612 aaPredicted RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 NSUN4Q96CB9 384 aaKnown RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 FBXL20Q96IG2 436 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 FSD1LQ9BXM9 530 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TLR8Q9NR97 1041 aaKnown RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 DUSP22Q9NRW4 184 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 DLL3Q9NYJ7 618 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 NKIRAS2Q9NYR9 191 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 BCCIPQ9P287 314 aaKnown RBP eCLIP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 FZD4Q9ULV1 537 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 OSGIN2Q9Y236 505 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 SPATA31A1Q5TZJ5 1347 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 RSF1Q96T23 1441 aaPredicted RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 SUV39H1O43463 412 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PEX1O43933 1283 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 KAT7O95251 611 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CHRM2P08172 466 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 SFPQP23246 707 aaKnown RBP eCLIP5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PRPH2P23942 346 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 AVPR2P30518 371 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 MAPK4P31152 587 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CXCR5P32302 372 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 HOXD12P35452 270 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CDH15P55291 814 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CFHR3Q02985 330 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 GOLGA8FQ08AF8 430 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 LMAN2Q12907 356 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 MAMLD1Q13495 774 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 GPR162Q16538 588 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 RUNDC3AQ59EK9 446 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PLAC9Q5JTB6 97 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ANKRD16Q6P6B7 361 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PDXDC1Q6P996 788 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 KYAT3Q6YP21 454 aaKnown RBP5.63□□□□□ -1.51
UPF3B-203ENST00000478840 SLC39A5Q6ZMH5 540 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ADGRG6Q86SQ4 1221 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 LSMEM1Q8N8F7 131 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 SRFBP1Q8NEF9 429 aaKnown RBP5.63□□□□□ -1.51
UPF3B-203ENST00000478840 TNIP2Q8NFZ5 429 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 METTL6Q8TCB7 284 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CUL5Q93034 780 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 LOXL4Q96JB6 756 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CLSTN3Q9BQT9 956 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 AIFM2Q9BRQ8 373 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ITPAQ9BY32 194 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 MUC13Q9H3R2 512 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 MROH8Q9H579 483 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 BRF2Q9HAW0 419 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 VEZTQ9HBM0 779 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ARHGEF3Q9NR81 526 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ANKEF1Q9NU02 776 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 ALKBH4Q9NXW9 302 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 KCND2Q9NZV8 630 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 KLQ9UEF7 1012 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 TBC1D29Q9UFV1 150 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 VPS28Q9UK41 221 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 CAMK2AQ9UQM7 478 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PSAT1Q9Y617 370 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 PIAS3Q9Y6X2 628 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 RUSC2Q8N2Y8 1516 aa5.63□□□□□ -1.51
UPF3B-203ENST00000478840 A0A1W2PQM1 296 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 NPIPB15A6NHN6 443 aaPredicted RBP5.62□□□□□ -1.51
UPF3B-203ENST00000478840 TMEM232C9JQI7 657 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ORC4O43929 436 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ITGAMP11215 1152 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 HNF1BP35680 557 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 MLH1P40692 756 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 RGS2P41220 211 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 RPS6KA3P51812 740 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 MPP3Q13368 585 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ALKBH1Q13686 389 aaKnown RBP5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ZNF585AQ6P3V2 769 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 CPLX4Q7Z7G2 160 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 GALNT7Q86SF2 657 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 C1orf210Q8IVY1 113 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 SCN4BQ8IWT1 228 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ADPRHL1Q8NDY3 354 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ABHD11Q8NFV4 315 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ETNPPLQ8TBG4 499 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 RUFY2Q8WXA3 655 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 Q96MF0 132 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 SLC25A18Q9H1K4 315 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 SFXN1Q9H9B4 322 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 DIAPH3Q9NSV4 1193 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 TESQ9UGI8 421 aaKnown RBP5.62□□□□□ -1.51
UPF3B-203ENST00000478840 ST6GALNAC2Q9UJ37 374 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 SARDHQ9UL12 918 aa5.62□□□□□ -1.51
UPF3B-203ENST00000478840 GTPBP1O00178 669 aaKnown RBP5.61□□□□□ -1.51
UPF3B-203ENST00000478840 AHCYL1O43865 530 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 MAST3O60307 1309 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 PLOD3O60568 738 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 NPSP0C0P6 89 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 NR2F6P10588 404 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 LYL1P12980 280 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 SLC8A1P32418 973 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms