RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 AHI1Q8N157 1196 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 PGBD3Q8N328 593 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 DCLK2Q8N568 766 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 ZNF557Q8N988 423 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-206ENST00000478214 C3orf20Q8ND61 904 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 CYB5D2Q8WUJ1 264 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 CPLX3Q8WVH0 158 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 RUBCNQ92622 972 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 IGSF8Q969P0 613 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 RAB6CQ9H0N0 254 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 TMPRSS4Q9NRS4 437 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 BCCIPQ9P287 314 aaKnown RBP eCLIP16.11■□□□□ 0.17
HMGA1-206ENST00000478214 VANGL2Q9ULK5 521 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 SNX10Q9Y5X0 201 aa16.11■□□□□ 0.17
HMGA1-206ENST00000478214 TCRBV5S1A1TA0A578 114 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 TMCO5BA8MYB1 307 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 H0Y626 953 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 NPC1O15118 1278 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 ENDOD1O94919 500 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 GABRG2P18507 467 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 SDC4P31431 198 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 RDXP35241 583 aaKnown RBP16.1■□□□□ 0.17
HMGA1-206ENST00000478214 RFC1P35251 1148 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-206ENST00000478214 MTA1Q13330 715 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 ENPP2Q13822 863 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 CDO1Q16878 200 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 CCDC14Q49A88 953 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 RABGAP1LQ5R372 815 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 SH3PXD2AQ5TCZ1 1133 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 DNAJC24Q6P3W2 148 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 KBTBD6Q86V97 674 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 FAM131BQ86XD5 332 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 DNAAF5Q86Y56 855 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 CCDC117Q8IWD4 279 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-206ENST00000478214 MCOLN2Q8IZK6 566 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 RPRD1AQ96P16 312 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-206ENST00000478214 HINFPQ9BQA5 517 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 SELENOOQ9BVL4 669 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 NCDNQ9UBB6 729 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 INTS6Q9UL03 887 aaKnown RBP16.1■□□□□ 0.17
HMGA1-206ENST00000478214 PAXBP1Q9Y5B6 917 aa16.1■□□□□ 0.17
HMGA1-206ENST00000478214 SIGLEC16A6NMB1 481 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 DDX3XO00571 662 aaKnown RBP eCLIP16.09■□□□□ 0.171e-36■■■□□ 16.6
HMGA1-206ENST00000478214 GYPCP04921 128 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 DLDP09622 509 aaKnown RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 HLA-EP13747 358 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 POLR2EP19388 210 aaKnown RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 RRM1P23921 792 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 PRKCHP24723 683 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 E2F5Q15329 346 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 USP39Q53GS9 565 aaKnown RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 TTC39BQ5VTQ0 682 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 LAIR1Q6GTX8 287 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 WDR59Q6PJI9 974 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 SERPINA13PQ6UXR4 307 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 CCAR2Q8N163 923 aaKnown RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 FAM160A2Q8N612 972 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-206ENST00000478214 RLN3Q8WXF3 142 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 SLC6A17Q9H1V8 727 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 TMEM51Q9NW97 253 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 CAPN11Q9UMQ6 739 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 PLA2G4CQ9UP65 541 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 ZNF292O60281 2723 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 SDK1Q7Z5N4 2213 aa16.09■□□□□ 0.17
HMGA1-206ENST00000478214 A0A1B0GVM2 712 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 TCAF2A6NFQ2 919 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ATP5BP06576 529 aaKnown RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 TPM3P06753 285 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 NDUFV2P19404 249 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 CSKP41240 450 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 PTPN9P43378 593 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 NUMBP49757 651 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ZBED6P86452 979 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 STARD3Q14849 445 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 PTPRNQ16849 979 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 PLK5Q496M5 336 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 FNDC3BQ53EP0 1204 aaKnown RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 PITRM1Q5JRX3 1037 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 HGSNATQ68CP4 663 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ZNF683Q8IZ20 524 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 FRMD1Q8N878 549 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ZNF366Q8N895 744 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 CENPIQ92674 756 aaPredicted RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 TTC17Q96AE7 1141 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 IQCDQ96DY2 449 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 MCEEQ96PE7 176 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 KIAA1522Q9P206 1035 aaPredicted RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 GMEB2Q9UKD1 530 aa16.08■□□□□ 0.16
HMGA1-206ENST00000478214 LUC7L2Q9Y383 392 aaKnown RBP16.08■□□□□ 0.16
HMGA1-206ENST00000478214 ZBTB24O43167 697 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-206ENST00000478214 CBFA2T2O43439 604 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 SYNCRIPO60506 623 aaKnown RBP16.07■□□□□ 0.16
HMGA1-206ENST00000478214 CNTN5O94779 1100 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 EPHX1P07099 455 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 GZMAP12544 262 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 GPD1P21695 349 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 BCKDHBP21953 392 aa16.07■□□□□ 0.16
HMGA1-206ENST00000478214 MZF1P28698 734 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-206ENST00000478214 P2RY2P41231 377 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms