RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 E5RJQ4 531 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PTGES3LE9PB15 166 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 ACADSP16219 412 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 TYMPP19971 482 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 SKIV2L2P42285 1042 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 IRX1P78414 480 aaPredicted RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 TMEM26Q6ZUK4 368 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MARK2Q7KZI7 788 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 GRIN3AQ8TCU5 1115 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 HNRNPLLQ8WVV9 542 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 CDCA5Q96FF9 252 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 ADAM2Q99965 735 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 HGH1Q9BTY7 390 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 A1CFQ9NQ94 594 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 MAGEB16A2A368 324 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 FAM20BO75063 409 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 CCR4P51679 360 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PTENP60484 403 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RAB14P61106 215 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 CDH17Q12864 832 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PRKAA1Q13131 559 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KCNT2Q6UVM3 1135 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 ZFPM1Q8IX07 1006 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DDHD1Q8NEL9 900 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RNFT2Q96EX2 444 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 A0A1B0GW55 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 TRIM43BA6NCK2 446 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 SLCO1B7G3V0H7 640 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 EML1O00423 815 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RECQL4O94761 1208 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L2P0CJ85 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L3P0CJ86 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L4P0CJ87 422 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L5P0CJ88 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L6P0CJ89 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4L7P0CJ90 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 FGFR3P22607 806 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 TGFB2P61812 414 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PAPD7Q5XG87 772 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 ZCCHC8Q6NZY4 707 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 C16orf46Q6P387 395 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 IZUMO2Q6UXV1 221 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 SLC16A10Q8TF71 515 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PIK3R5Q8WYR1 880 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 CLIP3Q96DZ5 547 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 POMKQ9H5K3 350 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUX4Q9UBX2 424 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 ZSCAN5DPP0CG00 497 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 UMPSP11172 480 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PSEN2P49810 448 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 C1DQ13901 141 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 SIX5Q8N196 739 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 CSGALNACT1Q8TDX6 532 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RSPH9Q9H1X1 276 aaPredicted RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 A0A096LPK6 155 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 FAM220BPB1ANY3 271 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 TRDMT1O14717 391 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 IFNA14P01570 189 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KRT6AP02538 564 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KRT6BP04259 564 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MIPP30301 263 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KRT6CP48668 564 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 NR2C2P49116 596 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PKN2Q16513 984 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 ATAD3BQ5T9A4 648 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MFSD7Q6UXD7 560 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 EID3Q8N140 333 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KYQ8NBH2 561 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 USP7Q93009 1102 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MARK4Q96L34 752 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 PURBQ96QR8 312 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 KLHL1Q9NR64 748 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.18□□□□□ -0.62
VAPB-204ENST00000475243 AHSPQ9NZD4 102 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 NDUFAF1Q9Y375 327 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 NKRFO15226 690 aaKnown RBP eCLIP11.18□□□□□ -0.623e-6■■□□□ 12
VAPB-204ENST00000475243 ZNF862O60290 1169 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 OR56A5P0C7T3 313 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MARSP56192 900 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 XRCC4Q13426 336 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 FAM98BQ52LJ0 330 aaKnown RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 MTFR1LQ9H019 292 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 TBC1D3BA6NDS4 549 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 ZNF7P17097 686 aaPredicted RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 GRK2P25098 689 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 MAPK10P53779 464 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 HIRAP54198 1017 aaPredicted RBP11.18□□□□□ -0.62
VAPB-204ENST00000475243 PRKAG1P54619 331 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 AMPD2Q01433 879 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 C11orf88Q6PI97 169 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 NPNTQ6UXI9 565 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RGL4Q8IZJ4 473 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 FAM9CQ8IZT9 166 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 RXFP1Q9HBX9 757 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 SLC24A2Q9UI40 661 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 DUSP12Q9UNI6 340 aa11.18□□□□□ -0.62
VAPB-204ENST00000475243 KANSL1LA0AUZ9 987 aa11.17□□□□□ -0.62
VAPB-204ENST00000475243 BUD23O43709 281 aaKnown RBP11.17□□□□□ -0.62
VAPB-204ENST00000475243 HS6ST1O60243 411 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms