RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SLC26A9Q7LBE3 791 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 APCDD1Q8J025 514 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 OR52K2Q8NGK3 314 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 BTN2A3PQ96KV6 586 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 TAB2Q9NYJ8 693 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 PLA2G4CQ9UP65 541 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 WASF3Q9UPY6 502 aa14.6□□□□□ -0.07
UPF3A-204ENST00000475218 METTL12A8MUP2 240 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 HSF2BPO75031 334 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 NDUFS2O75306 463 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 APOEP02649 317 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 UCHL3P15374 230 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 CYP11B1P15538 503 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 POLR2EP19388 210 aaKnown RBP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 ACSL1P33121 698 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 DPP6P42658 865 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 NOVA1P51513 510 aaKnown RBP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 ARID5AQ03989 594 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 SEMA3BQ13214 749 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 UAP1L1Q3KQV9 507 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 EFHC1Q5JVL4 640 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 DAB2IPQ5VWQ8 1189 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 TRNP1Q6NT89 227 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 PIP4P1Q86T03 277 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 NOP9Q86U38 636 aaKnown RBP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 FAM124AQ86V42 546 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 CHSY1Q86X52 802 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 CADM4Q8NFZ8 388 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 CEP76Q8TAP6 659 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 ENOX1Q8TC92 643 aaKnown RBP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 IGSF8Q969P0 613 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 DDX50Q9BQ39 737 aaKnown RBP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 GANQ9H2C0 597 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.59□□□□□ -0.07
UPF3A-204ENST00000475218 DDIT4Q9NX09 232 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 DACH1Q9UI36 760 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 ZZEF1O43149 2961 aa14.59□□□□□ -0.07
UPF3A-204ENST00000475218 MAP1BP46821 2468 aaKnown RBP14.58□□□□□ -0.07
UPF3A-204ENST00000475218 EPHB6O15197 1021 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 DAB1O75553 588 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 GJB3O75712 270 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 ATP5BP06576 529 aaKnown RBP14.58□□□□□ -0.08
UPF3A-204ENST00000475218 CSRP1P21291 193 aaKnown RBP14.58□□□□□ -0.08
UPF3A-204ENST00000475218 GGCXP38435 758 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 NUMBP49757 651 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 BNC1Q01954 994 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 SLC6A3Q01959 620 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 RAPGEF1Q13905 1077 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 E2F5Q15329 346 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 CT47A1Q5JQC4 288 aaPredicted RBP14.58□□□□□ -0.08
UPF3A-204ENST00000475218 OR6B2Q6IFH4 312 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 CXorf57Q6NSI4 855 aaKnown RBP14.58□□□□□ -0.08
UPF3A-204ENST00000475218 ZNF397Q8NF99 534 aaPredicted RBP14.58□□□□□ -0.08
UPF3A-204ENST00000475218 NPY6RQ99463 290 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 FAM204AQ9H8W3 233 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 PCNX2A6NKB5 2137 aa14.58□□□□□ -0.08
UPF3A-204ENST00000475218 SYNJ2BP-COX16A0A087WUM0 186 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 F8VZ95 297 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ARHGAP33O14559 1287 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 EEF1GP26641 437 aaKnown RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 MZF1P28698 734 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 KRT9P35527 623 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 CDK17Q00537 523 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 CENPCQ03188 943 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 CDH18Q13634 790 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ARID5BQ14865 1188 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 KRT31Q15323 416 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 HNRNPA1L2Q32P51 320 aaKnown RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 C2CD6Q53TS8 623 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 C9orf64Q5T6V5 341 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 DCAF12L1Q5VU92 463 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 FBXL22Q6P050 247 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 C14orf80Q86SX3 495 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 MINDY1Q8N5J2 469 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 DEFB124Q8NES8 71 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 EPS8L1Q8TE68 723 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 FOXJ1Q92949 421 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 NT5C3BQ969T7 300 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ALG14Q96F25 216 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 NUP58Q9BVL2 599 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 GTPBP2Q9BX10 602 aaKnown RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 RSPH9Q9H1X1 276 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 C6orf106Q9H6K1 298 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 PIGVQ9NUD9 493 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 COX16Q9P0S2 106 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 SERGEFQ9UGK8 458 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 SLCO3A1Q9UIG8 710 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ERVW-1Q9UQF0 538 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 USP24Q9UPU5 2620 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ITIH6Q6UXX5 1313 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 ASPMQ8IZT6 3477 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 TTC34A8MYJ7 566 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 C10orf142B7Z368 130 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 SIN3BO75182 1162 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 CD59P13987 128 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 OXTRP30559 389 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 GABRB2P47870 512 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 STK19P49842 368 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-204ENST00000475218 SHC2P98077 582 aa14.57□□□□□ -0.08
UPF3A-204ENST00000475218 GFPT1Q06210 699 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms