RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CCDC117Q8IWD4 279 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 CARNMT1Q8N4J0 409 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 MLKLQ8NB16 471 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 SHC3Q92529 594 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 MYO19Q96H55 970 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 ADAM33Q9BZ11 813 aa17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 EIF2B4Q9UI10 523 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 XPO7Q9UIA9 1087 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 INTS6Q9UL03 887 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-204ENST00000469003 PKD1L2Q7Z442 2459 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 LUC7L3O95232 432 aaKnown RBP17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 DNTTP04053 509 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 ACSL1P33121 698 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 USP8P40818 1118 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 ST8SIA6P61647 398 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 APBA1Q02410 837 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 TTC31Q49AM3 519 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 DCAF6Q58WW2 860 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 ZC3H12AQ5D1E8 599 aaKnown RBP17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 ZNF776Q68DI1 518 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 LGI2Q8N0V4 545 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 CFAP52Q8N1V2 620 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 KDM1BQ8NB78 822 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 C1orf216Q8TAB5 229 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 BTN2A3PQ96KV6 586 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 SCNM1Q9BWG6 230 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 BTBD1Q9H0C5 482 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 C6orf106Q9H6K1 298 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 PCDHGC3Q9UN70 934 aa17.16■□□□□ 0.34
CCDC28B-204ENST00000469003 NUMA1Q14980 2115 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 SH3BP5O60239 455 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 SEMA4FO95754 770 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 GLI1P08151 1106 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 TACR2P21452 398 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 PON1P27169 355 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 MTIF2P46199 727 aaKnown RBP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 FAM193AP78312 1265 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 EIF4EBP2Q13542 120 aaPredicted RBP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 ARID5BQ14865 1188 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 HNRNPA1L2Q32P51 320 aaKnown RBP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 FSCBQ5H9T9 825 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 PITRM1Q5JRX3 1037 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 RAP1GAP2Q684P5 730 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 IL27RAQ6UWB1 636 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 CHSY1Q86X52 802 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 WDTC1Q8N5D0 677 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 ATP6V0D2Q8N8Y2 350 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 SNX19Q92543 992 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 MRGPRX3Q96LB0 322 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 RSPH9Q9H1X1 276 aaPredicted RBP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 MTG2Q9H4K7 406 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 ASNSD1Q9NWL6 643 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 KIAA1522Q9P206 1035 aaPredicted RBP17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 TJP2Q9UDY2 1190 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 SCML1Q9UN30 329 aa17.15■□□□□ 0.34
CCDC28B-204ENST00000469003 H0Y626 953 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 TRIM16O95361 564 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 MOCS3O95396 460 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 CER1O95813 267 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 SRPRAP08240 638 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 ZNF883P0CG24 379 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 RDXP35241 583 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 PITX1P78337 314 aaPredicted RBP17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 BNC1Q01954 994 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 TAF5Q15542 800 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 MMS22LQ6ZRQ5 1243 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 NAXDQ8IW45 347 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 PPP1R13BQ96KQ4 1090 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 CAMK1GQ96NX5 476 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC2A13Q96QE2 648 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 CPXM1Q96SM3 734 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 TMEM121BQ9BXQ6 578 aaPredicted RBP17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 SGK2Q9HBY8 427 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 SIX2Q9NPC8 291 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC12A6Q9UHW9 1150 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 ERVW-1Q9UQF0 538 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 NEUROG3Q9Y4Z2 214 aa17.14■□□□□ 0.33
CCDC28B-204ENST00000469003 KCNU1A8MYU2 1149 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 F5H5T6 163 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 HYAL3O43820 417 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 SIN3BO75182 1162 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC2A3P11169 496 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 MATKP42679 507 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 CDK17Q00537 523 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 PTK2Q05397 1052 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 TRIP6Q15654 476 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 MAN2A1Q16706 1144 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 TPD52L1Q16890 204 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 ZNF423Q2M1K9 1284 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 EFHC1Q5JVL4 640 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 USP30Q70CQ3 517 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 PASD1Q8IV76 773 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 DHX40Q8IX18 779 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 DEFB106AQ8N104 65 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 KDF1Q8NAX2 398 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 GATA6Q92908 595 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 NOX5Q96PH1 765 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 PRMT1Q99873 361 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms