RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 OR1G1P47890 313 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 FXR1P51114 621 aaKnown RBP eCLIP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CLCNKBP51801 687 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 EPHB4P54760 987 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 MFAP3P55082 362 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CDH8P55286 799 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 TNNC1P63316 161 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DEFB103AP81534 67 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 POU5F1Q01860 360 aaKnown RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DSG1Q02413 1049 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 FPGSQ05932 587 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 MYO1EQ12965 1108 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 TBX2Q13207 712 aaPredicted RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 PPIGQ13427 754 aaKnown RBP eCLIP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DRAP1Q14919 205 aaPredicted RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DHCR24Q15392 516 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ASIC2Q16515 512 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SGSM1Q2NKQ1 1148 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF699Q32M78 642 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 WDR72Q3MJ13 1102 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ZACNQ401N2 412 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF667Q5HYK9 610 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 NOMO2Q5JPE7 1267 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CLLU1OSQ5K130 101 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SFMBT2Q5VUG0 894 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 C9orf57Q5W0N0 161 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CPZQ66K79 652 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 PDXDC1Q6P996 788 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 TRIM65Q6PJ69 517 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CD300LDQ6UXZ3 194 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DSTYKQ6XUX3 929 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ATG14Q6ZNE5 492 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 C15orf39Q6ZRI6 1047 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 UBE2Q1Q7Z7E8 422 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF280BQ86YH2 543 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 FAM26EQ8N5C1 309 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 OR8K1Q8NGG5 319 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 LMO3Q8TAP4 145 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 HASPINQ8TF76 798 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DLG3Q92796 817 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CASD1Q96PB1 797 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 STK33Q9BYT3 514 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 GANQ9H2C0 597 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 APOBEC3GQ9HC16 384 aaKnown RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SIX2Q9NPC8 291 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 IL23AQ9NPF7 189 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SEPT11Q9NVA2 429 aaKnown RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNHIT6Q9NWK9 470 aaKnown RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM161AQ9NX61 479 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CEP72Q9P209 647 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SIX4Q9UIU6 781 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 AJAP1Q9UKB5 411 aaPredicted RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 ITGA11Q9UKX5 1188 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 CAPN11Q9UMQ6 739 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 PRG3Q9Y2Y8 225 aaPredicted RBP4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 DERAQ9Y315 318 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 C2CD2Q9Y426 696 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SNX9Q9Y5X1 595 aa4.34□□□□□ -1.71
TMEM39A-204ENST00000468545 SCN5AQ14524 2016 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 SIP14410 1827 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ITIH6Q6UXX5 1313 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 GTPBP10A4D1E9 387 aaKnown RBP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 PRAMEF25A6NGN4 478 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 KPNA7A9QM74 516 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 I3L4J1 428 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 PODXLO00592 558 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 PIRO00625 290 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 CYB561D2O14569 222 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 PMM2O15305 246 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 MFAP3LO75121 409 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ZC3H11AO75152 810 aaKnown RBP eCLIP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 KRT37O76014 449 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 B3GAT3O94766 335 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ALDH2P05091 517 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 PDGFRBP09619 1106 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 C1QTNF9P0C862 333 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 P4HA1P13674 534 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ATP2A2P16615 1042 aaKnown RBP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP3A5P20815 502 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 TNFAIP3P21580 790 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 SDHAP31040 664 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ATICP31939 592 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 BRCC3P46736 316 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 LIMS1P48059 325 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 TAF6P49848 677 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 SCNN1BP51168 640 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 GSDMDP57764 484 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 WDR5P61964 334 aaKnown RBP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 NOP14P78316 857 aaKnown RBP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ZBED6P86452 979 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 OCRLQ01968 901 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ENPEPQ07075 957 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 GRIK3Q13003 919 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 CUL2Q13617 745 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 TRIM14Q14142 442 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 ZBTB6Q15916 424 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 TDRD12Q587J7 1177 aaKnown RBP4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 XKR4Q5GH76 650 aa4.33□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM240Q5SV17 173 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms