RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 HSMCR30P0CW71 290 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 PAICSP22234 425 aaKnown RBP8.9□□□□□ -0.99
HPS4-209ENST00000466781 CCND1P24385 295 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 ADCYAP1R1P41586 468 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 DDR2Q16832 855 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 DGKKQ5KSL6 1271 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 LGI2Q8N0V4 545 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 TPCN2Q8NHX9 752 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 SERPINB11Q96P15 392 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 CCT8L2Q96SF2 557 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 APOL2Q9BQE5 337 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 DCLK3Q9C098 648 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 ZDHHC6Q9H6R6 413 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 KLHL1Q9NR64 748 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 RRN3Q9NYV6 651 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 NFAT5O94916 1531 aa8.9□□□□□ -0.99
HPS4-209ENST00000466781 H3BRB1 525 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 GUCY1B2O75343 617 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 VAV1P15498 845 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 NPTX2P47972 431 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 CLK2P49760 499 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 OTUD4Q01804 1114 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 IKBKEQ14164 716 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 NR1I3Q14994 352 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 USP45Q70EL2 814 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 TFAP2DQ7Z6R9 452 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PACSIN1Q9BY11 444 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 TUT1Q9H6E5 874 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 C10orf88Q9H8K7 445 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 KLHL3Q9UH77 587 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 ANAPC2Q9UJX6 822 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 LMO7Q8WWI1 1683 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 ABCC6O95255 1503 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 AGRPO00253 132 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 EIF3HO15372 352 aaKnown RBP eCLIP8.89□□□□□ -0.998e-6■□□□□ 10.6
HPS4-209ENST00000466781 LSM8O95777 96 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 FCGR1AP12314 374 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 AXLP30530 894 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 C21orf59P57076 290 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 POLR2LP62875 67 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 BIKQ13323 160 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 OR8H2Q8N162 312 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 KCNB2Q92953 911 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 ELMO3Q96BJ8 720 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 TPD52L3Q96J77 140 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PGLYRP2Q96PD5 576 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 REXO4Q9GZR2 422 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 RHBGQ9H310 441 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MRPL17Q9NRX2 175 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 RBM22Q9NW64 420 aaKnown RBP eCLIP8.89□□□□□ -0.99
HPS4-209ENST00000466781 SMPD4Q9NXE4 827 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 AP4S1Q9Y587 144 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 XRN1Q8IZH2 1706 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 HIST1H2ABP04908 130 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 NTSP30990 170 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 GPR1P46091 355 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MARSP56192 900 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 BEX3Q00994 111 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 FBXL19Q6PCT2 694 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 HIST3H2AQ7L7L0 130 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 HIST1H2ACQ93077 130 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 FAM163AQ96GL9 167 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 PANX3Q96QZ0 392 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 NAT9Q9BTE0 207 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 SYNPO2Q9UMS6 1093 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 FAM50BQ9Y247 325 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 STARD13Q9Y3M8 1113 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 AFDNP55196 1824 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 LINC00854A0A1B0GVQ3 168 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MAGEB16A2A368 324 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 KLHL18O94889 574 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 SARSP49591 514 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 GPR15P49685 360 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PKN1Q16512 942 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 ZNF618Q5T7W0 954 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PDPK2PQ6A1A2 396 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 KIAA1324Q6UXG2 1013 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 SPOCD1Q6ZMY3 1216 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 UTP15Q8TED0 518 aaKnown RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 STARD8Q92502 1023 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MCCC1Q96RQ3 725 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 PHTF1Q9UMS5 762 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 TIMM13Q9Y5L4 95 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 CICQ96RK0 1608 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 GAKO14976 1311 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 KPNA3O00505 521 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 TSC22D2O75157 780 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 GHRP10912 638 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PON1P27169 355 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MPP3Q13368 585 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 ZNHIT3Q15649 155 aaPredicted RBP8.89□□□□□ -0.99
HPS4-209ENST00000466781 INAQ16352 499 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 INSCQ1MX18 579 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 FAM20CQ8IXL6 584 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 SPPL2AQ8TCT8 520 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 FIG4Q92562 907 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 EDEM1Q92611 657 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 TBL1YQ9BQ87 522 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 PDCD2LQ9BRP1 358 aa8.89□□□□□ -0.99
HPS4-209ENST00000466781 MYLK2Q9H1R3 596 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms