RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	CABIN1	Q9Y6J0	2220 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	CETN3	O15182	167 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	IRAK2	O43187	625 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	SIN3B	O75182	1162 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	CALCA	P01258	141 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	DNTT	P04053	509 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	PAEP	P09466	180 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	LCP1	P13796	627 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	CSK	P41240	450 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	CTSO	P43234	321 aa	Predicted RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	RGS7	P49802	495 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	GALC	P54803	685 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	RACK1	P63244	317 aa	Known RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	KRT85	P78386	507 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	IL9R	Q01113	521 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	ARID5A	Q03989	594 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	SUZ12	Q15022	739 aa	Known RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	TEAD4	Q15561	434 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	ANKRD40	Q6AI12	368 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	MMS22L	Q6ZRQ5	1243 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	SCUBE3	Q8IX30	993 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	SIX6OS1	Q8N1H7	587 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	GALNT15	Q8N3T1	639 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	KDM1B	Q8NB78	822 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	LMO3	Q8TAP4	145 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	RNF139	Q8WU17	664 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	GOLGA1	Q92805	767 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	CCDC47	Q96A33	483 aa	Known RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	IPO9	Q96P70	1041 aa	Known RBP	11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	HESX1	Q9UBX0	185 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	KIAA1257	Q9ULG3	409 aa		11.59	□□□□□ -0.55
PTPN7-204	ENST00000462815	SHROOM3	Q8TF72	1996 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	TRIM49B	A6NDI0	452 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	GOLGA8CP	A6NN73	597 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	CBX4	O00257	560 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	PIK3R2	O00459	728 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	PMM2	O15305	246 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	MID1	O15344	667 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	LTF	P02788	710 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	ATP5B	P06576	529 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	CD19	P15391	556 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	POLR2E	P19388	210 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	CLDN6	P56747	220 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	RPS24	P62847	133 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	PNOC	Q13519	176 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	CST6	Q15828	149 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	TTC31	Q49AM3	519 aa	Predicted RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	PITRM1	Q5JRX3	1037 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	NUGGC	Q68CJ6	796 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	NCEH1	Q6PIU2	408 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	DHRS13	Q6UX07	377 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	KANSL1	Q7Z3B3	1105 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	MFN1	Q8IWA4	741 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	AADAT	Q8N5Z0	425 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	DQX1	Q8TE96	717 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	SAP25	Q8TEE9	199 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	FAM129B	Q96TA1	746 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	ELF4	Q99607	663 aa	Predicted RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	NUCKS1	Q9H1E3	243 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	NEUROG2	Q9H2A3	272 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	SUN2	Q9UH99	717 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	XPO7	Q9UIA9	1087 aa	Known RBP	11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815	SCML1	Q9UN30	329 aa		11.58	□□□□□ -0.56
PTPN7-204	ENST00000462815		A0A1W2PP55	124 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TTC34	A8MYJ7	566 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815		E9PAM4	449 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	IGLV3-25	P01717	112 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	ASL	P04424	464 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TBXAS1	P24557	533 aa	Predicted RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	BRD2	P25440	801 aa	Known RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	DRD3	P35462	400 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	SLC11A2	P49281	568 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	FMO5	P49326	533 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TBX4	P57082	545 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	FKBP3	Q00688	224 aa	Known RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	LRMP	Q12912	555 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	NNT	Q13423	1086 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	CNGA2	Q16280	664 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	MS4A13	Q5J8X5	152 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	PRAMEF14	Q5SWL7	426 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TCERG1L	Q5VWI1	586 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TMEM270	Q6UE05	265 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	GATAD2A	Q86YP4	633 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	UNC45B	Q8IWX7	931 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	DHX40	Q8IX18	779 aa	Known RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	PDCD7	Q8N8D1	485 aa	Known RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	HJURP	Q8NCD3	748 aa	Predicted RBP	11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TSC1	Q92574	1164 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	LRIG1	Q96JA1	1093 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	HSFY1	Q96LI6	401 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	FBXL12	Q9NXK8	326 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	FZD4	Q9ULV1	537 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	ERVW-1	Q9UQF0	538 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	PCDHGA1	Q9Y5H4	931 aa		11.57	□□□□□ -0.56
PTPN7-204	ENST00000462815	TARSL2	A2RTX5	802 aa	Known RBP	11.56	□□□□□ -0.56
PTPN7-204	ENST00000462815		M0QYV0	167 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms