RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 XPO7Q9UIA9 1087 aaKnown RBP23.58■■□□□ 1.37
PTPN4-207ENST00000460162 INTS6Q9UL03 887 aaKnown RBP23.58■■□□□ 1.37
PTPN4-207ENST00000460162 SCML1Q9UN30 329 aa23.58■■□□□ 1.37
PTPN4-207ENST00000460162 PCDHGC3Q9UN70 934 aa23.58■■□□□ 1.37
PTPN4-207ENST00000460162 MOCS3O95396 460 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 SEMA4FO95754 770 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 CER1O95813 267 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 PROS1P07225 676 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 PON1P27169 355 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 MTIF2P46199 727 aaKnown RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 EIF4EBP2Q13542 120 aaPredicted RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 ARID5BQ14865 1188 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 HNRNPA1L2Q32P51 320 aaKnown RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 ZC3H12AQ5D1E8 599 aaKnown RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 PITRM1Q5JRX3 1037 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 RAP1GAP2Q684P5 730 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 IL27RAQ6UWB1 636 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 LGI2Q8N0V4 545 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 C1orf216Q8TAB5 229 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 MRGPRX3Q96LB0 322 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 SCNM1Q9BWG6 230 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 RSPH9Q9H1X1 276 aaPredicted RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 C6orf106Q9H6K1 298 aaPredicted RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 FAM204AQ9H8W3 233 aa23.57■■□□□ 1.36
PTPN4-207ENST00000460162 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.57■■□□□ 1.36
PTPN4-207ENST00000460162 H0Y626 953 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 HSF2BPO75031 334 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 TRIM16O95361 564 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 SRPRAP08240 638 aaKnown RBP23.56■■□□□ 1.36
PTPN4-207ENST00000460162 ZNF883P0CG24 379 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 SLC2A3P11169 496 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 TACR2P21452 398 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 APBA1Q02410 837 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 MAN2A1Q16706 1144 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 TPD52L1Q16890 204 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-207ENST00000460162 FSCBQ5H9T9 825 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 TTC39BQ5VTQ0 682 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-207ENST00000460162 USP30Q70CQ3 517 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 NAXDQ8IW45 347 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 FAM114A1Q8IWE2 563 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 CFAP52Q8N1V2 620 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 ATP6V0D2Q8N8Y2 350 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 SNX19Q92543 992 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 NOX5Q96PH1 765 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 SLC2A13Q96QE2 648 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 CPXM1Q96SM3 734 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 TMEM121BQ9BXQ6 578 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-207ENST00000460162 SGK2Q9HBY8 427 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 CHMP5Q9NZZ3 219 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 KIAA1522Q9P206 1035 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-207ENST00000460162 ITIH6Q6UXX5 1313 aa23.56■■□□□ 1.36
PTPN4-207ENST00000460162 IGF2RP11717 2491 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 F5H5T6 163 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 TOP3BO95985 862 aaKnown RBP23.55■■□□□ 1.36
PTPN4-207ENST00000460162 SPINK2P20155 84 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 PITX1P78337 314 aaPredicted RBP23.55■■□□□ 1.36
PTPN4-207ENST00000460162 CDK17Q00537 523 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 PTK2Q05397 1052 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 PPP1R13BQ96KQ4 1090 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 CLSTN2Q9H4D0 955 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 SIX2Q9NPC8 291 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 OSGEPQ9NPF4 335 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 SLC12A6Q9UHW9 1150 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 NEUROG3Q9Y4Z2 214 aa23.55■■□□□ 1.36
PTPN4-207ENST00000460162 KCNU1A8MYU2 1149 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 C1QTNF9BB2RNN3 333 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 SH3BP5O60239 455 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 RNASEH1O60930 286 aaKnown RBP23.54■■□□□ 1.36
PTPN4-207ENST00000460162 SIN3BO75182 1162 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 C1QTNF9P0C862 333 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 CCR1P32246 355 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 RDXP35241 583 aaKnown RBP23.54■■□□□ 1.36
PTPN4-207ENST00000460162 MATKP42679 507 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 AFF3P51826 1226 aaKnown RBP23.54■■□□□ 1.36
PTPN4-207ENST00000460162 MTA1Q13330 715 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 TAF5Q15542 800 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 ZNF423Q2M1K9 1284 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 EFHC1Q5JVL4 640 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 MMS22LQ6ZRQ5 1243 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 PASD1Q8IV76 773 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 WDTC1Q8N5D0 677 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 PABPC3Q9H361 631 aaKnown RBP23.54■■□□□ 1.36
PTPN4-207ENST00000460162 MTG2Q9H4K7 406 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 DDIT4Q9NX09 232 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 ERVW-1Q9UQF0 538 aa23.54■■□□□ 1.36
PTPN4-207ENST00000460162 TP53BP1Q12888 1972 aaPredicted RBP23.54■■□□□ 1.36
PTPN4-207ENST00000460162 TMEM8BA6NDV4 472 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 HYAL3O43820 417 aaPredicted RBP23.53■■□□□ 1.36
PTPN4-207ENST00000460162 ABCB4P21439 1286 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 SNX16P57768 344 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 FAM193AP78312 1265 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 SFSWAPQ12872 951 aaKnown RBP23.53■■□□□ 1.36
PTPN4-207ENST00000460162 SLC12A1Q13621 1099 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 RABGAP1LQ5R372 815 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 RNF219Q5W0B1 726 aaPredicted RBP23.53■■□□□ 1.36
PTPN4-207ENST00000460162 OLFML1Q6UWY5 402 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 C11orf57Q6ZUT1 292 aaPredicted RBP23.53■■□□□ 1.36
PTPN4-207ENST00000460162 DEFB106AQ8N104 65 aa23.53■■□□□ 1.36
PTPN4-207ENST00000460162 C1orf131Q8NDD1 294 aaKnown RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms